SITEHOUND-web: a server for ligand binding site identification in protein structures. - Wikidata - awgldk - TriplyDB

SITEHOUND-web: a server for ligand binding site identification in protein structures.

SITEHOUND-web: a server for ligand binding site identification in protein structures.

http://www.wikidata.org/entity/Q30376571

about

A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis 3DLigandSite: predicting ligand-binding sites using similar structures Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods Molecular dynamic simulations reveal the structural determinants of Fatty Acid binding to oxy-myoglobin Solution Structure, Copper Binding and Backbone Dynamics of Recombinant Ber e 1–The Major Allergen from Brazil Nut Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure Modeling of human prokineticin receptors: interactions with novel small-molecule binders and potential off-target drugs Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms webPDBinder: a server for the identification of ligand binding sites on protein structures FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions Zika virus NS5 protein potential inhibitors: an enhanced in silico approach in drug discovery Regulation of the PI3K pathway through a p85α monomer-homodimer equilibrium Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.Assessment of ligand binding residue predictions in CASP8 EasyMIFS and SiteHound: a toolkit for the identification of ligand-binding sites in protein structures.AutoSite: an automated approach for pseudo-ligands prediction-from ligand-binding sites identification to predicting key ligand atoms.Computational methods in drug discovery.Phosfinder: a web server for the identification of phosphate-binding sites on protein structures The FunFOLD2 server for the prediction of protein-ligand interactions.Using RosettaLigand for small molecule docking into comparative models.Characterization of Bile Salt Hydrolase from Lactobacillus gasseri FR4 and Demonstration of Its Substrate Specificity and Inhibitory Mechanism Using Molecular Docking Analysis.FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.3V: cavity, channel and cleft volume calculator and extractor.Knowledge-based annotation of small molecule binding sites in proteins.Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities.Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii.Insights from molecular modeling and dynamics simulation of pathogen resistance (R) protein from brinjal Protein-ligand binding region prediction (PLB-SAVE) based on geometric features and CUDA acceleration.Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble Structure-activity relationships of FMRF-NH2 peptides demonstrate A role for the conserved C terminus and unique N-terminal extension in modulating cardiac contractility.Structural analysis of the novel influenza A (H7N9) viral Neuraminidase interactions with current approved neuraminidase inhibitors Oseltamivir, Zanamivir, and Peramivir in the presence of mutation R289K SPILLO-PBSS: detecting hidden binding sites within protein 3D-structures through a flexible structure-based approach.Structure-based virtual screening for drug discovery: principles, applications and recent advances.SiteComp: a server for ligand binding site analysis in protein structures.AlphaSpace: Fragment-Centric Topographical Mapping To Target Protein-Protein Interaction Interfaces.Bioinformatics and variability in drug response: a protein structural perspective.Pharmacoinformatics, Adaptive Evolution, and Elucidation of Six Novel Compounds for Schizophrenia Treatment by Targeting DAOA (G72) Isoforms.The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.Biliverdin targets enolase and eukaryotic initiation factor 2 (eIF2α) to reduce the growth of intraerythrocytic development of the malaria parasite Plasmodium falciparum

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P2860

SITEHOUND-web: a server for ligand binding site identification in protein structures.

http://www.wikidata.org/entity/Q30376571

description

2009 nî lūn-bûn

@nan

2009 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2009年の論文

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2009年論文

@yue

2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

@zh-tw

2009年论文

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name

SITEHOUND-web: a server for ligand binding site identification in protein structures.

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SITEHOUND-web: a server for ligand binding site identification in protein structures.

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type

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SITEHOUND-web: a server for ligand binding site identification in protein structures.

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SITEHOUND-web: a server for ligand binding site identification in protein structures.

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SITEHOUND-web: a server for ligand binding site identification in protein structures.

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SITEHOUND-web: a server for ligand binding site identification in protein structures.

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Nucleic Acids Research

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SITEHOUND-web: a server for ligand binding site identification in protein structures.

@en

P2093

Dario Ghersi

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Marylens Hernandez

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Roberto Sanchez

http://www.w3.org/2001/XMLSchema#string

P2860

UCSF Chimera--a visualization system for exploratory research and analysis

Comparative protein modelling by satisfaction of spatial restraints

Evolutionary predictions of binding surfaces and interactions.

Improving accuracy and efficiency of blind protein-ligand docking by focusing on predicted binding sites.

Protein binding site prediction using an empirical scoring function

Inferring protein function from structure.

Ligand binding: functional site location, similarity and docking.

High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer.

X-SITE: use of empirically derived atomic packing preferences to identify favourable interaction regions in the binding sites of proteins.

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

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W413-6

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scholarly article

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10.1093/NAR/GKP281

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Web Server issue

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37

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2009-04-26T00:00:00Z

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24365526

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19398430

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2703923

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