Base-base and deoxyribose-base stacking interactions in B-DNA and Z-DNA: a quantum-chemical study.
about
Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotesThe structure of a stable intermediate in the A left-right-arrow B DNA helix transitionLooped out and perpendicular: deformation of Watson-Crick base pair associated with actinomycin D binding.Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?Oxetane locked thymidine in the Dickerson-Drew dodecamer causes local base pairing distortions -- an NMR structure and hydration study.Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regionsParallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchipsPromoter discrimination at class I MarA regulon promoters mediated by glutamic acid 89 of the MarA transcriptional activator of Escherichia coli.Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts.DNA basepair step deformability inferred from molecular dynamics simulationsMINT: software to identify motifs and short-range interactions in trajectories of nucleic acids.Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases.Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozymePromoters of Escherichia coli versus promoter islands: function and structure comparison.Unusual DNA duplex and hairpin motifs.Predicting helical coaxial stacking in RNA multibranch loopsIn vivo, in vitro, and in silico analysis of methylation of the HIV-1 provirus.Presence and role of cytosine methylation in DNA viruses of animals.The binding orientation of a norindenoisoquinoline in the topoisomerase I-DNA cleavage complex is primarily governed by pi-pi stacking interactions.The base sequence dependent flexibility of linear single-stranded oligoribonucleotides correlates with the reactivity of the phosphodiester bond.Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.Lone pair-π interactions in biological systems: occurrence, function, and physical origin.Context based computational analysis and characterization of ARS consensus sequences (ACS) of Saccharomyces cerevisiae genome.Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelix(Ala) variants.Thermodynamic parameters for DNA sequences with dangling ends.Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)(2) B<-->A intermediate crystal structure.A computational proposal for the experimentally observed discriminatory behavior of hypoxanthine, a weak universal nucleobase.Cooperative effects on the formation of intercalation sitesHybrid simulation approach incorporating microscopic interaction along with rigid body degrees of freedom for stacking between base pairs.HU binds and folds single-stranded DNA.Guanosine quadruplexes in solution: a small-angle x-ray scattering analysis of temperature effects on self-assembling of deoxyguanosine monophosphate.TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence.Higher order structural effects stabilizing the reverse Watson-Crick Guanine-Cytosine base pair in functional RNAs.Relative stability of different DNA guanine quadruplex stem topologies derived using large-scale quantum-chemical computations.'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.Guanine base stacking in G-quadruplex nucleic acids.Three- and four-body nonadditivities in nucleic acid tetramers: a CCSD(T) study.The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.Structural and electronic properties of barbituric acid and melamine-containing ribonucleosides as plausible components of prebiotic RNA: implications for prebiotic self-assembly.
P2860
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P2860
Base-base and deoxyribose-base stacking interactions in B-DNA and Z-DNA: a quantum-chemical study.
description
1997 nî lūn-bûn
@nan
1997 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
1997 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
1997年の論文
@ja
1997年論文
@yue
1997年論文
@zh-hant
1997年論文
@zh-hk
1997年論文
@zh-mo
1997年論文
@zh-tw
1997年论文
@wuu
name
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@ast
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@en
type
label
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@ast
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@en
prefLabel
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@ast
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@en
P2093
P2860
P1433
P1476
Base-base and deoxyribose-base ...... DNA: a quantum-chemical study.
@en
P2093
P2860
P356
10.1016/S0006-3495(97)78049-4
P407
P577
1997-07-01T00:00:00Z