motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites
about
Strategies for Integrated Analysis of Genetic, Epigenetic, and Gene Expression Variation in Cancer: Addressing the ChallengesMaking sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genomeIdentification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.A systematic, large-scale comparison of transcription factor binding site models.Parkinson's disease-associated genetic variation is linked to quantitative expression of inflammatory genes.Enrichment of risk SNPs in regulatory regions implicate diverse tissues in Parkinson's disease etiology.SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity.Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.Functional annotation of sixty-five type-2 diabetes risk SNPs and its application in risk predictionConfirmation of five novel susceptibility loci for systemic lupus erythematosus (SLE) and integrated network analysis of 82 SLE susceptibility loci.Reducing GWAS Complexity.Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry.A Meta-analysis of Multiple Myeloma Risk Regions in African and European Ancestry Populations Identifies Putatively Functional Loci.Association of Ribonuclease T2 Gene Polymorphisms With Decreased Expression and Clinical Characteristics of Severity in Crohn's Disease.Epigenetic profiling of growth plate chondrocytes sheds insight into regulatory genetic variation influencing height.Principles and methods of in-silico prioritization of non-coding regulatory variants.Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints.MS AHI1 genetic risk promotes IFNγ+ CD4+ T cells.Identification of Single Nucleotide Non-coding Driver Mutations in Cancer.Functional Variants Identified Efficiently through an Integrated Transcriptome and Epigenome Analysis.Common α-globin variants modify hematologic and other clinical phenotypes in sickle cell trait and disease.A catalog of potential putative functional variants in psoriasis genome-wide association regions.Cellular network perturbations by disease-associated variants.Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
P2860
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P2860
motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites
description
2015 nî lūn-bûn
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2015年の論文
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2015年学术文章
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2015年学术文章
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2015年学术文章
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2015年学术文章
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name
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@ast
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@en
type
label
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@ast
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@en
prefLabel
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@ast
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@en
P2860
P356
P1433
P1476
motifbreakR: an R/Bioconductor ...... scription factor binding sites
@en
P2093
Gerhard A Coetzee
Simon G Coetzee
P2860
P304
P356
10.1093/BIOINFORMATICS/BTV470
P407
P577
2015-08-12T00:00:00Z