Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
about
Multi-omic data integration enables discovery of hidden biological regularities.Alteration of protein function by a silent polymorphism linked to tRNA abundance.Insights into the mechanisms of eukaryotic translation gained with ribosome profilingRibosome pausing, arrest and rescue in bacteria and eukaryotes.Gene Architectures that Minimize Cost of Gene Expression.Kinetic modeling predicts a stimulatory role for ribosome collisions at elongation stall sites in bacteriaIntegrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing.Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.The Frequency of Internal Shine-Dalgarno-like Motifs in Prokaryotes.Quality over quantity: optimizing co-translational protein folding with non-'optimal' synonymous codons.Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center.Depletion of Shine-Dalgarno Sequences within Bacterial Coding Regions Is Expression Dependent.Binding of Macrolide Antibiotics Leads to Ribosomal Selection against Specific Substrates Based on Their Charge and Size.A ribosome profiling study of mRNA cleavage by the endonuclease RelE.Leveraging genome-wide datasets to quantify the functional role of the anti-Shine-Dalgarno sequence in regulating translation efficiency.Differential bicodon usage in lowly and highly abundant proteinsMachine learning in computational biology to accelerate high-throughput protein expression.Synonymous codon bias as a basis for novel antibiotic design: from nucleotide wobble constraint to ribosomal garrotte.The ribosome in action: Tuning of translational efficiency and protein folding.Synonymous Codons: Choose Wisely for Expression.N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes.Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome.Elongation Factor P Interactions with the Ribosome Are Independent of Pausing.Ribosome signatures aid bacterial translation initiation site identification.REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.Transcription-translation coupling: direct interactions of RNA polymerase with ribosomes and ribosomal subunits.Diversity of translation initiation mechanisms across bacterial species is driven by environmental conditions and growth demands.Translation efficiency is maintained at elevated temperature in E. coli.Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics.GWIPS-viz: 2018 update.Plastid ribosome pausing is induced by multiple features and is linked to protein complex assembly.Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution.Codon optimality, bias and usage in translation and mRNA decay.Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation.The extent of ribosome queuing in budding yeast.Codon Clarity or Conundrum?Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene.Cell-free prediction of protein expression costs for growing cells.Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifsRibosomal stalling landscapes revealed by high-throughput inverse toeprinting of mRNA libraries
P2860
Q31139124-5717827E-DE77-48E6-AE92-9CD186B66E0DQ33693618-569424CA-DEC6-48EF-A6F9-5F287F605B9DQ34546772-321E48E7-A9CF-4F80-9E90-CF1C5BF5B0D3Q34550302-924486F0-0701-431E-9FF6-09EE3208B930Q36227467-2C747656-64C6-47BB-9A99-014DD4638C59Q36370057-07B29567-5D4D-41F2-A41A-35901F15C9FFQ36607387-39B0C1B6-F684-448E-ADF6-B721D0157E83Q36904240-FE825B2C-631C-4CDC-8DA8-9DDF02335F79Q37090535-8DD47ED4-EA9C-48BC-9E3A-1F3026230719Q37230401-D12EDB64-66E7-4885-9E6D-9B0983C8DE08Q37379660-3AA8D53B-B816-440C-A140-D27ACE0009F6Q37401494-8C507D0D-1FB5-451B-9D64-16BB2C0AA3DCQ37428512-521D1AAA-5850-45AB-AAE5-28E524424706Q37577444-A0AAC087-51BD-45CC-A93F-EB7647DB5317Q37637098-48AC0D53-6E25-42F3-A19E-7F529F3FD2BFQ37694092-416B8D93-E943-45B0-A17B-FE2BA27EBC2FQ38431964-0338BF92-C30D-4492-B25C-4F5DD373D29CQ38647697-239FFB44-B4E4-4B66-BC65-7478C288BB78Q38838979-431E9DD8-3C87-447E-B25A-6380D5893C36Q39178155-A93EC693-2962-43F6-874F-9E5CCE4F2445Q40335166-7C7EB32C-FBFF-494E-A719-E77F59BEECF9Q41141354-A294C560-F37F-4F55-A2E1-ED046FDD3AF0Q41205328-5EB05689-933D-447E-A795-F941C118A3EAQ41558321-8B562986-C15B-4A0B-920A-B47B1B5CDA3FQ42694925-5F247BF8-47C4-4D7C-9657-4DFF4F846BEAQ45986934-CE975CDF-A737-4371-85A1-A6E9A3CD8A9BQ46245223-BA07137F-7C14-48AA-9D80-FD7B357BA682Q46368493-FA5127F9-3397-418B-837E-D01D876BAD8EQ47096901-87B87903-5BBF-41C0-9783-2B954CA1C982Q47097666-DA96C102-7068-488F-A001-3A25AC261EAEQ47234530-40E03EF5-74A5-443F-BEE3-EC3B1F6E48BCQ47557438-FB935221-621C-434D-8FEC-64CA7FC69E70Q47668877-88592C58-9819-438E-80AE-B50DE7823442Q48123961-0D6957E4-8AB6-4C71-A6DA-A3B437A22548Q48149977-27C26A0C-0CCF-429B-9D72-686A7F2AB580Q50225502-F690F1FF-6111-4FD9-BCC1-F6EEAC364F6FQ51178202-703CF994-E0EB-46FA-AA26-EF671ECC92E2Q55000827-D38E5961-E4D1-456D-80E0-B12554281468Q58715385-07B47E11-7FE1-429B-B070-CC0454E3E632Q59136646-4C97A01D-AFF2-41A4-B03C-DE52B520AB34
P2860
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
description
2016 nî lūn-bûn
@nan
2016年の論文
@ja
2016年論文
@yue
2016年論文
@zh-hant
2016年論文
@zh-hk
2016年論文
@zh-mo
2016年論文
@zh-tw
2016年论文
@wuu
2016年论文
@zh
2016年论文
@zh-cn
name
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
@en
type
label
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
@en
prefLabel
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
@en
P2093
P2860
P1433
P1476
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
@en
P2093
Allen R Buskirk
Christopher J Woolstenhulme
Fuad Mohammad
Rachel Green
P2860
P304
P356
10.1016/J.CELREP.2015.12.073
P577
2016-01-12T00:00:00Z