about
Synthesis of phylogeny and taxonomy into a comprehensive tree of lifePhylogenetic analyses reveal the shady history of C4 grassesMega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approachesDifferential gene expression in the siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next-generation sequencing workflowsNew grass phylogeny resolves deep evolutionary relationships and discovers C4 originsMaximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesisPhylogenomic Analyses Support Traditional Relationships within CnidariaOrthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomicsSome limitations of public sequence data for phylogenetic inference (in plants)An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plantsOptimizing de novo assembly of short-read RNA-seq data for phylogenomics.Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation.Phyutility: a phyloinformatics tool for trees, alignments and molecular data.Increasing data transparency and estimating phylogenetic uncertainty in supertrees: Approaches using nonparametric bootstrapping.Bioactive endophytes warrant intensified exploration and conservation.Elucidating the evolutionary history of the Southeast Asian, holoparasitic, giant-flowered Rafflesiaceae: pliocene vicariance, morphological convergence and character displacement.Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge treesAngiosperm phylogeny: 17 genes, 640 taxa.Resolving the evolutionary relationships of molluscs with phylogenomic tools.Another look at the root of the angiosperms reveals a familiar tale.Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing.Analyzing and synthesizing phylogenies using tree alignment graphsThree keys to the radiation of angiosperms into freezing environments.Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales.RAxML-Light: a tool for computing terabyte phylogeniesThe origins of C4 grasslands: integrating evolutionary and ecosystem science.PUmPER: phylogenies updated perpetually.Morphogenera, monophyly, and macroevolutiontreePL: divergence time estimation using penalized likelihood for large phylogenies.Climate, niche evolution, and diversification of the "bird-cage" evening primroses (Oenothera, sections Anogra and Kleinia).Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales).10KP: A phylodiverse genome sequencing plan.So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.Life history influences rates of climatic niche evolution in flowering plants.Species selection maintains self-incompatibilityConstructing a broadly inclusive seed plant phylogenyTarget sequence capture in the Brazil nut family (Lecythidaceae): Marker selection and in silico capture from genome skimming dataEvolution of l-DOPA 4,5-dioxygenase activity allows for recurrent specialisation to betalain pigmentation in CaryophyllalesA consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales
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P50
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Stephen A. Smith
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Stephen A. Smith
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