Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation. - Wikidata - awgldk - TriplyDB

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation.

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation.

http://www.wikidata.org/entity/Q42253055

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Uncoupling transcription from covalent histone modification.Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain Prenucleosomes and Active Chromatin Epigenomics and the structure of the living genome Genome-wide nucleosome positioning during embryonic stem cell development Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription Epigenome characterization at single base-pair resolution.Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast.MACE: model based analysis of ChIP-exo.MNase titration reveals differences between nucleosome occupancy and chromatin accessibility Understanding nucleosome dynamics and their links to gene expression and DNA replication.Dynamic nucleosome organization at hox promoters during zebrafish embryogenesis.Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.Yeast high mobility group protein HMO1 stabilizes chromatin and is evicted during repair of DNA double strand breaks.MPE-seq, a new method for the genome-wide analysis of chromatin structure Nucleosome positioning: bringing order to the eukaryotic genome.A conserved function for the H2A.Z C terminus.Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin.The prenucleosome, a stable conformational isomer of the nucleosome.Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor.Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex.Topoisomerase II regulates yeast genes with singular chromatin architectures.Nucleosome-free region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement.Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes.Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in C. elegans.The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo.Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.CAM: A quality control pipeline for MNase-seq data.MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers.H4K44 Acetylation Facilitates Chromatin Accessibility during Meiosis.Establishing nucleosome architecture and stability at promoters: Roles of pioneer transcription factors and the RSC chromatin remodeler.Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping.The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation.An Investigation on the Expression Level of Interleukin 10 (IL-10) in the Healthy and Mastitic Holstein Cows and the Bioinformatics Analysis of Nucleosome Profile.

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P2860

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation.

http://www.wikidata.org/entity/Q42253055

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name

Nucleosome fragility reveals n ...... d poises genes for activation.

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Nucleosome fragility reveals n ...... d poises genes for activation.

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Nucleosome fragility reveals n ...... d poises genes for activation.

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Nucleosome fragility reveals n ...... d poises genes for activation.

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Nucleosome fragility reveals n ...... d poises genes for activation.

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Nucleosome fragility reveals n ...... d poises genes for activation.

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Genome Research

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Nucleosome fragility reveals n ...... d poises genes for activation.

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Jianhui Yao

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Rui Chen

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Wei Li

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Xiangwei He

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Yuanxin Xi

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P2860

Crystal structure of the nucleosome core particle at 2.8 A resolution

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

The transcriptional landscape of the yeast genome defined by RNA sequencing

Genomic expression programs in the response of yeast cells to environmental changes

Remodeling of yeast genome expression in response to environmental changes.

The yeast Mediator complex and its regulation

Alteration of nucleosome structure as a mechanism of transcriptional regulation

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging.

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718-724

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10.1101/GR.117101.110

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5

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21

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