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Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infectionNeuropathy- and myopathy-associated mutations in human small heat shock proteins: Characteristics and evolutionary history of the mutation sitesAdaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C VirusNot so different after all: a comparison of methods for detecting amino acid sites under selectionSocial and Genetic Networks of HIV-1 Transmission in New York CityAn evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1Parsing social network survey data from hidden populations using stochastic context-free grammarsModeling HIV-1 drug resistance as episodic directional selectionIDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platformDifferences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder VirusLess is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selectionEvolutionary origins of human herpes simplex viruses 1 and 2A case for the ancient origin of coronavirusesPurifying selection can obscure the ancient age of viral lineagesA massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses28-way vertebrate alignment and conservation track in the UCSC Genome BrowserHyPhy: hypothesis testing using phylogeniesDatamonkey: rapid detection of selective pressure on individual sites of codon alignmentsDatamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biologyThe global transmission network of HIV-1Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia.Evolutionary fingerprinting of genes.Using phylogeography to characterize the origins of the HIV-1 subtype F epidemic in Romania.Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy.Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, CaliforniaCoping with viral diversity in HIV vaccine design.HIV-specific probabilistic models of protein evolutionAn evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope.Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants.CodonTest: modeling amino acid substitution preferences in coding sequences.Using HIV networks to inform real time prevention interventionsCharacterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B.Using HIV transmission networks to investigate community effects in HIV prevention trials.Evolution of duplicated alpha-tubulin genes in ciliates.The origins of sexually transmitted HIV among men who have sex with men.Detecting individual sites subject to episodic diversifying selection.Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa.HIV-1 neutralizing antibody response and viral genetic diversity characterized with next generation sequencingHIV-1 clade B pol evolution following primary infection.
P50
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P50
name
Sergei L Kosakovsky Pond
@en
type
label
Sergei L Kosakovsky Pond
@en
prefLabel
Sergei L Kosakovsky Pond
@en