Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins - Wikidata - wikimedia - TriplyDB

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

http://www.wikidata.org/entity/Q24308775

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The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation RNA-binding protein HuR autoregulates its expression by promoting alternative polyadenylation site usage Advances in the characterization of RNA-binding proteins Specificity and nonspecificity in RNA-protein interactions Computational biology of RNA interactions RNA-binding proteins in neurodegeneration: Seq and you shall receive Targeting the Y/CCAAT box in cancer: YB-1 (YBX1) or NF-Y?High-throughput characterization of protein-RNA interactions Identification of RNA-protein interaction networks using PAR-CLIP Affinity regression predicts the recognition code of nucleic acid–binding proteins Crystallographic Analysis of Polypyrimidine Tract-Binding Protein-Raver1 Interactions Involved in Regulation of Alternative Splicing Computational approaches towards understanding human long non-coding RNA biology Dissecting the expression landscape of RNA-binding proteins in human cancers Systematic analysis of cis-elements in unstable mRNAs demonstrates that CUGBP1 is a key regulator of mRNA decay in muscle cells Identification of evolutionarily conserved exons as regulated targets for the splicing activator tra2β in development IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces Computational Methods for CLIP-seq Data Processing.SNPlice: variants that modulate Intron retention from RNA-sequencing data.A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data.Bioinformatic tools for analysis of CLIP ribonucleoprotein data De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function.Sequence-non-specific effects of RNA interference triggers and microRNA regulators.The multiplicity of alternative splicing decisions in Caenorhabditis elegans is linked to specific intronic regulatory motifs and minisatellites.Cluster based prediction of PDZ-peptide interactions GraphProt: modeling binding preferences of RNA-binding proteins.Learning the language of post-transcriptional gene regulation.Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.Differential protein occupancy profiling of the mRNA transcriptome.RBPmap: a web server for mapping binding sites of RNA-binding proteins An RRM-ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion Post-transcriptional regulation of mu-opioid receptor: role of the RNA-binding proteins heterogeneous nuclear ribonucleoprotein H1 and F Regulation of alternative splicing by histone modifications.Emerging functions of SRSF1, splicing factor and oncoprotein, in RNA metabolism and cancer.Post-transcriptional control during chronic inflammation and cancer: a focus on AU-rich elements.RNA Bind-n-Seq: quantitative assessment of the sequence and structural binding specificity of RNA binding proteins.Predicting RNA-protein interactions using only sequence information.

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P2860

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

http://www.wikidata.org/entity/Q24308775

description

2009 nî lūn-bûn

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2009 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2009 թվականի հուլիսին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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Rapid and systematic analysis ...... cities of RNA-binding proteins

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Nature Biotechnology

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Rapid and systematic analysis ...... cities of RNA-binding proteins

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Benjamin J Blencowe

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Debashish Ray

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Hilal Kazan

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Shaheynoor Talukder

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Sidharth Chaudhry

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Timothy R Hughes

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P2860

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

A novel splicing regulator shares a nuclear import pathway with SR proteins

Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

MEME: discovering and analyzing DNA and protein sequence motifs

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

The RNA-binding SAM domain of Smaug defines a new family of post-transcriptional regulators.

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

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667-70

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1121120

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10.1038/NBT.1550

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7

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27

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Lourdes Peña Castillo

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2009-07-01T00:00:00Z

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26325689

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1016306836

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19561594

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ELAV like RNA binding protein 1

Small nuclear ribonucleoprotein polypeptide A

KH RNA binding domain containing, signal transduction associated 3

Y-box binding protein 1

Serine and arginine rich splicing factor 1

RNA binding motif protein 4