MD simulations of ligand-bound and ligand-free aptamer: molecular level insights into the binding and switching mechanism of the add A-riboswitch
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The impact of a ligand binding on strand migration in the SAM-I riboswitchFree State Conformational Sampling of the SAM-I Riboswitch Aptamer DomainMethods to enable the design of bioactive small molecules targeting RNA.On the role of Hoogsteen:Hoogsteen interactions in RNA: ab initio investigations of structures and energiesThe purine riboswitch as a model system for exploring RNA biology and chemistryDynamic energy landscapes of riboswitches help interpret conformational rearrangements and function.Insights into ligand binding to PreQ1 Riboswitch Aptamer from molecular dynamics simulations.Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulationsBiophysical Approaches to Bacterial Gene Regulation by Riboswitches.Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamics.Ligand-mediated and tertiary interactions cooperatively stabilize the P1 region in the guanine-sensing riboswitch.Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model.The importance of helix P1 stability for structural pre-organization and ligand binding affinity of the adenine riboswitch aptamer domain.DFT and MD study of the divalent-cation-mediated interaction of ochratoxin A with DNA nucleosides.Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch.Loop-loop interaction in an adenine-sensing riboswitch: a molecular dynamics studyRole of ligand binding in structural organization of add A-riboswitch aptamer: a molecular dynamics simulation.Role of the adenine ligand on the stabilization of the secondary and tertiary interactions in the adenine riboswitch.Co-Transcriptional Folding and Regulation Mechanisms of Riboswitches.Single-molecule chemical denaturation of riboswitches.RNABP COGEST: a resource for investigating functional RNAs.Molecular mechanism of preQ1 riboswitch action: a molecular dynamics study.Atomistic basis for the on-off signaling mechanism in SAM-II riboswitch.Impact of 2'-hydroxyl sampling on the conformational properties of RNA: update of the CHARMM all-atom additive force field for RNA.Computational Methods for Modeling Aptamers and Designing Riboswitches.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
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P2860
MD simulations of ligand-bound and ligand-free aptamer: molecular level insights into the binding and switching mechanism of the add A-riboswitch
description
2009 nî lūn-bûn
@nan
2009年の論文
@ja
2009年学术文章
@wuu
2009年学术文章
@zh-cn
2009年学术文章
@zh-hans
2009年学术文章
@zh-my
2009年学术文章
@zh-sg
2009年學術文章
@yue
2009年學術文章
@zh
2009年學術文章
@zh-hant
name
MD simulations of ligand-bound ...... hanism of the add A-riboswitch
@en
type
label
MD simulations of ligand-bound ...... hanism of the add A-riboswitch
@en
prefLabel
MD simulations of ligand-bound ...... hanism of the add A-riboswitch
@en
P2093
P2860
P356
P1433
P1476
MD simulations of ligand-bound ...... hanism of the add A-riboswitch
@en
P2093
Abhijit Mitra
Gopalakrishnan Bulusu
Monika Sharma
P2860
P304
P356
10.1261/RNA.1675809
P407
P577
2009-07-22T00:00:00Z