Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.
about
Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing dataUniversal amplification, next-generation sequencing, and assembly of HIV-1 genomes.Viral population analysis and minority-variant detection using short read next-generation sequencing.Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data.Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection.Read length versus depth of coverage for viral quasispecies reconstructionUse of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes.Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairsVTBuilder: a tool for the assembly of multi isoform transcriptomes.Simplified large-scale Sanger genome sequencing for influenza A/H3N2 virus.Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source.V-Phaser 2: variant inference for viral populations.Comparison of illumina and 454 deep sequencing in participants failing raltegravir-based antiretroviral therapy.A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolatesInsight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.Hepatitis B virus sub-genotype A1 infection is characterized by high replication levels and rapid emergence of drug resistance in HIV-positive adults receiving first-line antiretroviral therapy in MalawiQuantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing.Rapid deep sequencing of patient-derived HIV with ion semiconductor technology.Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism.Genome plasticity of triple-reassortant H1N1 influenza A virus during infection of vaccinated pigs.Persistent HIV-1 replication maintains the tissue reservoir during therapyHistorical perspective, development and applications of next-generation sequencing in plant virologyBenchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.Of contigs and quagmires: next-generation sequencing pitfalls associated with transcriptomic studies.Inference with viral quasispecies diversity indices: clonal and NGS approaches.Deep sequencing: becoming a critical tool in clinical virology.Characterization of Hepatitis C Virus (HCV) Envelope Diversification from Acute to Chronic Infection within a Sexually Transmitted HCV Cluster by Using Single-Molecule, Real-Time Sequencing.Enhanced surveillance of HIV-1 drug resistance in recently infected MSM in the UK.A generic assay for whole-genome amplification and deep sequencing of enterovirus A71.Distinct Effects of T-705 (Favipiravir) and Ribavirin on Influenza Virus Replication and Viral RNA Synthesis.Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum.Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges.Refining the Results of a Classical SELEX Experiment by Expanding the Sequence Data Set of an Aptamer Pool Selected for Protein A.
P2860
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P2860
Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.
description
2012 nî lūn-bûn
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2012 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի մարտին հրատարակված գիտական հոդված
@hy
2012年の論文
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2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
Analysis of high-depth sequenc ...... platforms using Segminator II.
@ast
Analysis of high-depth sequenc ...... platforms using Segminator II.
@en
Analysis of high-depth sequenc ...... platforms using Segminator II.
@nl
type
label
Analysis of high-depth sequenc ...... platforms using Segminator II.
@ast
Analysis of high-depth sequenc ...... platforms using Segminator II.
@en
Analysis of high-depth sequenc ...... platforms using Segminator II.
@nl
prefLabel
Analysis of high-depth sequenc ...... platforms using Segminator II.
@ast
Analysis of high-depth sequenc ...... platforms using Segminator II.
@en
Analysis of high-depth sequenc ...... platforms using Segminator II.
@nl
P2093
P2860
P50
P356
P1433
P1476
Analysis of high-depth sequenc ...... platforms using Segminator II.
@en
P2093
David L Robertson
Greg Baillie
Simon J Watson
P2860
P2888
P356
10.1186/1471-2105-13-47
P577
2012-03-23T00:00:00Z
P5875
P6179
1002889193