The 2016 NAIA Division II Men’s Basketball National Championship was held in March at Keeter Gymnasium in Point Lookout, Missouri. The 25th annual NAIA basketball tournament featured thirty-two teams playing in a single-elimination format. The championship game was won by the Indiana Wesleyan Wildcats of Marion, Indiana over the Saint Francis Cougars of Fort Wayne, Indiana by a score of 69 to 66.