Andrew Stewart (died 1541) was a 16th-century Scottish noble and cleric. He was the legitimate son of John Stewart, 1st Earl of Atholl and , daughter of William Sinclair, Earl of Orkney. His paternal grandmother was Joan Beaufort, former queen-consort of Scotland (to James I). Andrew chose an ecclesiastical career, held a canonry in Dunkeld Cathedral and was rector of Blair parish church (Dunkeld diocese), a church under the control of the earls of Atholl.