Edmund Lilly D.D. (died 7 February 1610) was an English academic administrator at the University of Oxford. Lilly became Master (head) of Balliol College, Oxford on 1 August 1580, a post he held until his death in 1610.During his time as Master of Balliol, he was twice Vice-Chancellor of Oxford University for the periods 1585–1586 and 1593–1596.Lilly was deemed an "excellent divine".