Gene Disease Database
In bioinformatics, a Gene Disease Database is a systematized collection of data, typically structured to model aspects of reality, in a way to comprehend the underlying mechanisms of complex diseases, by understanding multiple composite interactions between phenotype-genotype relationships and gene-disease mechanisms. Gene Disease Databases integrate human gene-disease associations from various expert curated databases and text mining derived associations including Mendelian, complex and environmental diseases.
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Description
primaryTopic
Gene Disease Database
In bioinformatics, a Gene Disease Database is a systematized collection of data, typically structured to model aspects of reality, in a way to comprehend the underlying mechanisms of complex diseases, by understanding multiple composite interactions between phenotype-genotype relationships and gene-disease mechanisms. Gene Disease Databases integrate human gene-disease associations from various expert curated databases and text mining derived associations including Mendelian, complex and environmental diseases.
has abstract
In bioinformatics, a Gene Dise ...... ex and environmental diseases.
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title
DisGeNET
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RGD
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The Ensembl genome database project.
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The Online Mendelian Inheritance in Man
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UniProt
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Wikipage page ID
44,248,347
page length (characters) of wiki page
Wikipage revision ID
1,021,980,552
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author
Ferran Sanz and Laura I. Furlong
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Mary E. Shimoyama, PhD; Howard J. Jacob, PhD
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bookmark
Yes – both individual protein entries and searches
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Center
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EMBL-EBI, UK; SIB, Switzerland; PIR, US.
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Research Programme on Biomedical Informatics IMIM-UPF
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citation
Hubbard, et al.
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Ongoing and future developments at the Universal Protein Resource
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curation
Yes – manual and automatic. Ru ...... and computational algorithms.
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data
Description
Ensembl
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Integrates human gene-disease associations
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OMIM is a compendium of human genes and genetic phenotypes.
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The Rat Genome Database
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UniProt is the universal prote ...... TrEMBL and PIR-PSD databases.
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download
& for downloading complete data sets
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format
Custom flat file, FASTA, GFF, RDF, XML.
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frequency
annual
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label
Classification
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Subclassification
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Subtype of Databases
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Type of Databases
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laboratory
Integrative Biomedical Informatics Group
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license
Creative Commons Attribution-NoDerivs
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Organism
All
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Human
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Rattus norvegicus
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pmid
25,355,511
25,398,906
25,877,637
scope
Associations Database
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Protein annotation
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title
DisGeNET
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Gene Disease Database
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RGD
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The Ensembl genome database project.
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The Online Mendelian Inheritance in Man
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UniProt
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versioning
Yes
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webapp
Advanced search, BLAST, ClustalO, bulk retrieval/download, ID mapping
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webservice
Yes – JAVA API see info & REST see info
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wikiPageUsesTemplate
description
Integrates human gene-disease associations
OMIM is a compendium of human genes and genetic phenotypes.
The Rat Genome Database
UniProt is the universal prote ...... , TrEMBL and PIR-PSDdatabases.
subject
hypernym
comment
In bioinformatics, a Gene Dise ...... ex and environmental diseases.
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label
Gene Disease Database
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