Sequence co-evolution gives 3D contacts and structures of protein complexes
Sequence co-evolution gives 3D contacts and structures of protein complexesSequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamicsUnderstanding the fabric of protein crystals: computational classification of biological interfaces and crystal contactsComputational prediction of protein interfaces: A review of data driven methodsFrom residue coevolution to protein conformational ensembles and functional dynamics.Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 ChaperonesStructural and Functional Characterization of the Bacterial Type III Secretion Export ApparatusProgress and challenges in predicting protein interfacesInterolog interfaces in protein-protein dockingStructure and Sequence Analyses of Clustered Protocadherins Reveal Antiparallel Interactions that Mediate Homophilic SpecificityAntiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4Protein structure determination by combining sparse NMR data with evolutionary couplingsLarge-scale determination of previously unsolved protein structures using evolutionary informationCombining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.3D RNA and Functional Interactions from Evolutionary CouplingsDetection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated serverSimultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.Big-data approaches to protein structure prediction.Protein structure determination using metagenome sequence data.Applications of contact predictions to structural biologyCalcium regulation of the human mitochondrial ATP-Mg/Pi carrier SLC25A24 uses a locking pin mechanism.Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sourcesCore Genes Evolve Rapidly in the Long-term Evolution Experiment with Escherichia coliRobust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.Network Analysis Reveals the Recognition Mechanism for Dimer Formation of Bulb-type Lectins.New Techniques for Ancient Proteins: Direct Coupling Analysis Applied on Proteins Involved in Iron Sulfur Cluster BiogenesisIdentification of the gene that codes for the σ2 receptor.Modeling Hsp70/Hsp40 interaction by multi-scale molecular simulations and coevolutionary sequence analysisDirect-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction.Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1.Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp OperonDid α-Synuclein and Glucocerebrosidase Coevolve? Implications for Parkinson's Disease.Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species.I-COMS: Interprotein-COrrelated Mutations ServerCoev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic treeAerobic Growth of Escherichia coli Is Reduced, and ATP Synthesis Is Selectively Inhibited when Five C-terminal Residues Are Deleted from the ϵ Subunit of ATP Synthase.Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator.Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs
P2860
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P2860
Sequence co-evolution gives 3D contacts and structures of protein complexes
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2014 nî lūn-bûn
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2014 թուականին հրատարակուած գիտական յօդուած
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2014 թվականին հրատարակված գիտական հոդված
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2014年の論文
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2014年論文
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2014年論文
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2014年論文
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2014年論文
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2014年論文
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2014年论文
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name
Sequence co-evolution gives 3D contacts and structures of protein complexes
@ast
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en-gb
Sequence co-evolution gives 3D contacts and structures of protein complexes
@nl
type
label
Sequence co-evolution gives 3D contacts and structures of protein complexes
@ast
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en-gb
Sequence co-evolution gives 3D contacts and structures of protein complexes
@nl
prefLabel
Sequence co-evolution gives 3D contacts and structures of protein complexes
@ast
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en-gb
Sequence co-evolution gives 3D contacts and structures of protein complexes
@nl
P2860
P50
P921
P3181
P356
P1433
P1476
Sequence co-evolution gives 3D contacts and structures of protein complexes
@en
P2093
Chris Sander
Oliver Kohlbacher
P2860
P3181
P356
10.7554/ELIFE.03430
P407
P577
2014-09-25T00:00:00Z