Improving microbial genome annotations in an integrated database context
about
Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathwaySupporting community annotation and user collaboration in the integrated microbial genomes (IMG) systemHigh-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, ItalyHigh-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.IMG/M: integrated genome and metagenome comparative data analysis system.Interactions in the microbiome: communities of organisms and communities of genesUnique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis.Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?Complete genome sequence of Novosphingobium pentaromativorans US6-1(T).High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of PanamaHigh-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg massHigh-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York.High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass.High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland.High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa RicaHigh-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris.High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum.High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea.High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6.High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in AustraliaThe standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of SifnosHigh-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soilHigh-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.Functional Annotations of Paralogs: A Blessing and a CurseComplete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.GROOLS: reactive graph reasoning for genome annotation through biological processes.
P2860
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P2860
Improving microbial genome annotations in an integrated database context
description
2013 nî lūn-bûn
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2013 թուականին հրատարակուած գիտական յօդուած
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2013 թվականին հրատարակված գիտական հոդված
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2013年の論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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2013年论文
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name
Improving microbial genome annotations in an integrated database context
@ast
Improving microbial genome annotations in an integrated database context
@en
Improving microbial genome annotations in an integrated database context
@en-gb
Improving microbial genome annotations in an integrated database context
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type
label
Improving microbial genome annotations in an integrated database context
@ast
Improving microbial genome annotations in an integrated database context
@en
Improving microbial genome annotations in an integrated database context
@en-gb
Improving microbial genome annotations in an integrated database context
@nl
altLabel
Improving Microbial Genome Annotations in an Integrated Database Context
@en
prefLabel
Improving microbial genome annotations in an integrated database context
@ast
Improving microbial genome annotations in an integrated database context
@en
Improving microbial genome annotations in an integrated database context
@en-gb
Improving microbial genome annotations in an integrated database context
@nl
P2093
P2860
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P3181
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P1476
Improving microbial genome annotations in an integrated database context
@en
P2093
I-Min A Chen
Victor M Markowitz
P2860
P304
P3181
P356
10.1371/JOURNAL.PONE.0054859
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P577
2013-01-01T00:00:00Z