NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail - Wikidata - awgldk - TriplyDB

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

http://www.wikidata.org/entity/Q21145335

about

Annotation-based feature extraction from sets of SBML models Current practice in software development for computational neuroscience and how to improve it Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language Action and language mechanisms in the brain: data, models and neuroinformatics Modeling the Cerebellar Microcircuit: New Strategies for a Long-Standing Issue Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative TrakEM2 software for neural circuit reconstruction Handling Metadata in a Neurophysiology Laboratory.Neurokernel: An Open Source Platform for Emulating the Fruit Fly Brain NSDF: Neuroscience Simulation Data Format BioModels: ten-year anniversary Combining computational models, semantic annotations and simulation experiments in a graph database OpenWorm: an open-science approach to modeling Caenorhabditis elegans Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)Python as a federation tool for GENESIS 3.0 Controlled vocabularies and semantics in systems biology A federated design for a neurobiological simulation engine: the CBI federated software architecture Channelpedia: an integrative and interactive database for ion channels A framework for the study of multiple realizations: the importance of levels of analysis Estimating parameters and predicting membrane voltages with conductance-based neuron models.Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience.Synaptic input sequence discrimination on behavioral timescales mediated by reaction-diffusion chemistry in dendrites.The connection-set algebra--a novel formalism for the representation of connectivity structure in neuronal network models.Collection of Simulated Data from a Thalamocortical Network Model.Wiring variations that enable and constrain neural computation in a sensory microcircuit Determinants of synaptic integration and heterogeneity in rebound firing explored with data-driven models of deep cerebellar nucleus cells.Network structure within the cerebellar input layer enables lossless sparse encoding.LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.The layer-oriented approach to declarative languages for biological modeling.Improving collaboration by standardization efforts in systems biology.Reaction-diffusion in the NEURON simulator.Equation-oriented specification of neural models for simulations.libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience.A flexible, interactive software tool for fitting the parameters of neuronal models.Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE).The role of markup for enabling interoperability in health informatics.Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue.An algorithm to detect and communicate the differences in computational models describing biological systems.GeNN: a code generation framework for accelerated brain simulations.PyRhO: A Multiscale Optogenetics Simulation Platform

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NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

http://www.wikidata.org/entity/Q21145335

description

2010 nî lūn-bûn

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2010 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2010 թվականի հունիսին հրատարակված գիտական հոդված

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2010年の論文

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JOURNAL.PCBI.1000815

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PLOS Computational Biology

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NeuroML: a language for descri ...... gh degree of biological detail

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Guy O Billings

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Michael L Hines

http://www.w3.org/2001/XMLSchema#string

Robert C Cannon

http://www.w3.org/2001/XMLSchema#string

Sharon Crook

http://www.w3.org/2001/XMLSchema#string

Simon R Barnes

http://www.w3.org/2001/XMLSchema#string

Thomas M Morse

http://www.w3.org/2001/XMLSchema#string

Upinder S Bhalla

http://www.w3.org/2001/XMLSchema#string

Yoana D Dimitrova

http://www.w3.org/2001/XMLSchema#string

P2860

PyNEST: A Convenient Interface to the NEST Simulator

Brian: a simulator for spiking neural networks in python

Towards NeuroML: model description methods for collaborative modelling in neuroscience.

Common data model for neuroscience data and data model exchange

Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics.

neuroConstruct: a tool for modeling networks of neurons in 3D space

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

CellML: its future, present and past

Model of cellular and network mechanisms for odor-evoked temporal patterning in the locust antennal lobe

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e1000815

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scholarly article

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2665695

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10.1371/JOURNAL.PCBI.1000815

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6

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6

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Padraig Gleeson

Andrew P Davison

Matteo Farinella

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2010-06-17T00:00:00Z

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44807235

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20585541

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2887454

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