Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model
about
A new clustering of antibody CDR loop conformationsCrystallographic model validation: from diagnosis to healingConversion of the enzyme guanylate kinase into a mitotic-spindle orienting protein by a single mutation that inhibits GMP-induced closingLoss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculationsInsight into a molecular interaction force supporting peptide backbones and its implication to protein loops and foldingImprovements to robotics-inspired conformational sampling in rosettaNeighboring residue effects in terminally blocked dipeptides: implications for residual secondary structures in intrinsically unfolded/disordered proteins.Analysis of dihedral angle preferences for alanine and glycine residues in alpha and beta transmembrane regions.Randomizing the unfolded state of peptides (and proteins) by nearest neighbor interactions between unlike residues.Improving hybrid statistical and physical forcefields through local structure enumeration.Beyond basins: φ,ψ preferences of a residue depend heavily on the φ,ψ values of its neighbors.Protein Structure Classification and Loop Modeling Using Multiple Ramachandran Distributions.(φ,ψ)₂ motifs: a purely conformation-based fine-grained enumeration of protein parts at the two-residue level.Retrieving backbone string neighbors provides insights into structural modeling of membrane proteins.Genomics-aided structure prediction.The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.Deriving high-resolution protein backbone structure propensities from all crystal data using the information maximization deviceA closer look into the α-helix basin.Molecular Dynamics Simulations of 441 Two-Residue Peptides in Aqueous Solution: Conformational Preferences and Neighboring Residue Effects with the Amber ff99SB-ildn-NMR Force Field.Dock 'n roll: folding of a silk-inspired polypeptide into an amyloid-like beta solenoid.Construction and comparison of the statistical coil states of unfolded and intrinsically disordered proteins from nearest-neighbor corrected conformational propensities of short peptides.Protein loop modeling by using fragment assembly and analytical loop closure.Profile of Michael I. Jordan.The intrinsic conformational features of amino acids from a protein coil library and their applications in force field development.Local interactions influence the fibrillation kinetics, structure and dynamics of Aβ(1-40) but leave the general fibril structure unchanged.Bayesian weighting of statistical potentials in NMR structure calculationAutomated real-space refinement of protein structures using a realistic backbone move set.Stability engineering of anti-EGFR scFv antibodies by rational design of a lambda-to-kappa swap of the VL framework using a structure-guided approachFurther along the Road Less Traveled: AMBER ff15ipq, an Original Protein Force Field Built on a Self-Consistent Physical ModelRCD+: Fast loop modeling server.Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.Sparsely populated residue conformations in protein structures: revisiting "experimental" Ramachandran maps.Residue-centric modeling and design of saccharide and glycoconjugate structures.The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core.Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.Pairwise amino acid secondary structural propensities.Mass & secondary structure propensity of amino acids explain their mutability and evolutionary replacementsUsing chirality to probe the conformational dynamics and assembly of intrinsically disordered amyloid proteins.Decrypting Strong and Weak Single-Walled Carbon Nanotubes Interactions with Mitochondrial Voltage-Dependent Anion Channels Using Molecular Docking and Perturbation Theory.
P2860
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P2860
Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model
description
2010 nî lūn-bûn
@nan
2010 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@ast
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en-gb
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@nl
type
label
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@ast
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en-gb
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@nl
altLabel
Neighbor-Dependent Ramachandra ...... chical Dirichlet Process Model
@en
prefLabel
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@ast
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en-gb
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@nl
P2093
P2860
P3181
P1476
Neighbor-dependent Ramachandra ...... chical Dirichlet process model
@en
P2093
Daniel Ting
Guoli Wang
Maxim Shapovalov
Rajib Mitra
P2860
P304
P3181
P356
10.1371/JOURNAL.PCBI.1000763
P407
P577
2010-04-01T00:00:00Z