PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
about
Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory systemUse of ChIP-Seq data for the design of a multiple promoter-alignment methodTranscriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIPA phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site predictionA survey of DNA motif finding algorithmsHigh-throughput characterization of protein-RNA interactionsIdentification of RNA-protein interaction networks using PAR-CLIPAnalysis of 5' gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animalsSwissRegulon, a database of genome-wide annotations of regulatory sites: recent updatesSystematic identification of cis-regulatory sequences active in mouse and human embryonic stem cellsAnalysis of the SOS response of Vibrio and other bacteria with multiple chromosomes.Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads.Connecting protein structure with predictions of regulatory sites.PROCAIN: protein profile comparison with assisting information.Computational Methods for CLIP-seq Data Processing.Inference of transcriptional regulation using gene expression data from the bovine and human genomesProbabilistic inference of transcription factor binding from multiple data sources.Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.Practical strategies for discovering regulatory DNA sequence motifs.Phylogeny based discovery of regulatory elements.GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optimaA comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factorsBinding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites.V1R promoters are well conserved and exhibit common putative regulatory motifs.Finding regulatory elements and regulatory motifs: a general probabilistic framework.Fine-tuning enhancer models to predict transcriptional targets across multiple genomesEvolution and selection in yeast promoters: analyzing the combined effect of diverse transcription factor binding sitesPrioritization of gene regulatory interactions from large-scale modules in yeast.Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolutionSIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.Modeling an evolutionary conserved circadian cis-elementPhyloGibbs-MP: module prediction and discriminative motif-finding by Gibbs samplingMTAP: the motif tool assessment platform.c-REDUCE: incorporating sequence conservation to detect motifs that correlate with expression.Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro.Extracting transcription factor binding sites from unaligned gene sequences with statistical models.Evolution of regulatory sequences in 12 Drosophila species.Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.Identifying regulatory elements in eukaryotic genomes.Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation
P2860
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P2860
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
description
2005 nî lūn-bûn
@nan
2005 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@ast
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en-gb
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@nl
type
label
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@ast
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en-gb
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@nl
altLabel
PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny
@en
prefLabel
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@ast
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en-gb
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@nl
P2860
P3181
P1476
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
@en
P2093
Eric D Siggia
Rahul Siddharthan
P2860
P3181
P356
10.1371/JOURNAL.PCBI.0010067
P407
P577
2005-12-01T00:00:00Z