Fast identification and removal of sequence contamination from genomic and metagenomic datasets
about
An extensive evaluation of read trimming effects on Illumina NGS data analysisThe Autoimmune EcologyAn introduction to the analysis of shotgun metagenomic dataSpecies-specific viromes in the ancestral holobiont HydraPregnant women carrying microcephaly foetuses and Zika virus contain potentially pathogenic microbes and parasites in their amniotic fluidWhole-genome assembly of Akkermansia muciniphila sequenced directly from human stoolTranscriptomic study reveals widespread spliced leader trans-splicing, short 5'-UTRs and potential complex carbon fixation mechanisms in the euglenoid Alga Eutreptiella spDe-novo RNA sequencing and metabolite profiling to identify genes involved in anthocyanin biosynthesis in Korean black raspberry (Rubus coreanus Miquel)The clinically approved antiviral drug sofosbuvir inhibits Zika virus replicationConserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks PrincipleExploring the rice dispensable genome using a metagenome-like assembly strategyGenome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod EvolutionThe transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolutionTranscriptomic characterization of the immunogenetic repertoires of heteromyid rodentsDevelopmental dynamics of the preterm infant gut microbiota and antibiotic resistomeExploring the "dark matter" of a mammalian proteome by protein structure and function modeling.Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidaseTissue-specific transcriptomics in the field cricket Teleogryllus oceanicus.Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data.QC-Chain: fast and holistic quality control method for next-generation sequencing data.Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic dataPrevention, diagnosis and treatment of high-throughput sequencing data pathologies.Consistency of metagenomic assignment programs in simulated and real data.Quality control of next-generation sequencing data without a referenceA reference floral transcriptome of sexual and apomictic Paspalum notatum.Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data.Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance.Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data.Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass DataSUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic dataThe Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats.From next-generation resequencing reads to a high-quality variant data set.Parasite infection of public databases: a data mining approach to identify apicomplexan contaminations in animal genome and transcriptome assemblies.Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis.Comparison of deep-water viromes from the atlantic ocean and the mediterranean seaGenetic characterization of human herpesvirus type 1: Full-length genome sequence of strain obtained from an encephalitis case from IndiaThree novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation.Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients.Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle.
P2860
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P2860
Fast identification and removal of sequence contamination from genomic and metagenomic datasets
description
2011 nî lūn-bûn
@nan
2011 թուականին հրատարակուած գիտական յօդուած
@hyw
2011 թվականին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Fast identification and remova ...... nomic and metagenomic datasets
@ast
Fast identification and remova ...... nomic and metagenomic datasets
@en
Fast identification and remova ...... nomic and metagenomic datasets
@en-gb
Fast identification and remova ...... nomic and metagenomic datasets
@nl
type
label
Fast identification and remova ...... nomic and metagenomic datasets
@ast
Fast identification and remova ...... nomic and metagenomic datasets
@en
Fast identification and remova ...... nomic and metagenomic datasets
@en-gb
Fast identification and remova ...... nomic and metagenomic datasets
@nl
altLabel
Fast Identification and Remova ...... nomic and Metagenomic Datasets
@en
prefLabel
Fast identification and remova ...... nomic and metagenomic datasets
@ast
Fast identification and remova ...... nomic and metagenomic datasets
@en
Fast identification and remova ...... nomic and metagenomic datasets
@en-gb
Fast identification and remova ...... nomic and metagenomic datasets
@nl
P2860
P3181
P1433
P1476
Fast identification and remova ...... nomic and metagenomic datasets
@en
P2093
Robert Schmieder
P2860
P304
P3181
P356
10.1371/JOURNAL.PONE.0017288
P407
P577
2011-01-01T00:00:00Z