SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network
about
Structural changes and proapoptotic peroxidase activity of cardiolipin-bound mitochondrial cytochrome cSHIFTX2: significantly improved protein chemical shift predictionRecommendations of the wwPDB NMR Validation Task ForceMechanisms of amyloid formation revealed by solution NMRSupramolecular Structure of Membrane-Associated Polypeptides by Combining Solid-State NMR and Molecular Dynamics SimulationsStructural basis of conformational transitions in the active site and 80′s loop in the FK506-binding protein FKBP12Structure of the Neisserial outer membrane protein Opa₆₀: loop flexibility essential to receptor recognition and bacterial engulfment.The common structural architecture of Shigella flexneri and Salmonella typhimurium type three secretion needlesLigand clouds around protein clouds: a scenario of ligand binding with intrinsically disordered proteinsProtein structure validation and refinement using amide proton chemical shifts derived from quantum mechanicsIntegrating solid-state NMR and computational modeling to investigate the structure and dynamics of membrane-associated ghrelinSecondary Structure of Rat and Human Amylin across Force FieldsProbabilistic validation of protein NMR chemical shift assignmentsPerformance of the WeNMR CS-Rosetta3 web server in CASD-NMRConformationally selective multidimensional chemical shift ranges in proteins from a PACSY database purged using intrinsic quality criteriaFractional enrichment of proteins using [2-(13)C]-glycerol as the carbon source facilitates measurement of excited state 13Cα chemical shifts with improved sensitivity.Quality assessment of protein NMR structures.RASP: rapid and robust backbone chemical shift assignments from protein structure.Force Field for Peptides and Proteins based on the Classical Drude OscillatorProtein structural information derived from NMR chemical shift with the neural network program TALOS-N.Predicting protein backbone chemical shifts from Cα coordinates: extracting high resolution experimental observables from low resolution models.Reliable resonance assignments of selected residues of proteins with known structure based on empirical NMR chemical shift predictionPPM_One: a static protein structure based chemical shift predictor.ProCS15: a DFT-based chemical shift predictor for backbone and Cβ atoms in proteins.NMR Backbone Assignment of Large Proteins by Using (13) Cα -Only Triple-Resonance Experiments.Automated assignment of NMR chemical shifts based on a known structure and 4D spectra.Systematic evaluation of CS-Rosetta for membrane protein structure prediction with sparse NOE restraints.MOAG-4 promotes the aggregation of α-synuclein by competing with self-protective electrostatic interactions.Protein structure refinement using a quantum mechanics-based chemical shielding predictorChemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field.PPM: a side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles.Rapid prediction of multi-dimensional NMR data sets.Improving 3D structure prediction from chemical shift data.¹H, ¹⁵N, and ¹³C chemical shift assignments of the C-Ala domain of the alanyl-tRNA synthetase of the psychrophilic bacterium Bizionia argentinensis sp. nov.Application of data mining tools for classification of protein structural class from residue based averaged NMR chemical shiftsMERA: a webserver for evaluating backbone torsion angle distributions in dynamic and disordered proteins from NMR data.Overview of Probing Protein-Ligand Interactions Using NMR.Molecular Dynamics Simulations of 441 Two-Residue Peptides in Aqueous Solution: Conformational Preferences and Neighboring Residue Effects with the Amber ff99SB-ildn-NMR Force Field.Characterizing a partially ordered miniprotein through folding molecular dynamics simulations: Comparison with the experimental data.Free-Energy Landscape of the Amino-Terminal Fragment of Huntingtin in Aqueous Solution
P2860
Q24169865-CBFBD79F-0491-4C71-B7E3-DAAB680D9D6FQ24604571-9CAF5A64-730C-4A0A-841E-7AC6A5E3F921Q24620570-E80BA267-BBD1-4320-A600-29BD620DE436Q26797492-6EE108C3-898B-4BB7-8971-E44D613EF5B0Q27670902-0A38DCF3-CBE4-43AB-BDF1-10E8BDF4FE55Q27681247-13C0BF9B-E085-406E-AD11-6099CD9C23C0Q27683700-2E0654B5-42F0-42BE-A3A2-E1950D59864CQ28488627-36E6DF81-20D9-445A-832F-642349B52E42Q28534062-36BD2B7B-F601-4B5B-8332-1451D91DDCFBQ28538174-8CE5A0DF-49FE-4F6E-9DAF-6674A87B8BF2Q28544962-05972DCE-52F9-4AFE-9C09-F03E1A1B2607Q28546876-E10019F8-66FF-4ECE-A1B2-73084BF79B27Q28601207-186FA5A5-5E2A-4EE2-B31F-378A72956B1CQ28607680-F5181983-A20E-4429-872B-A42015059A35Q28831260-2EBCBA28-B1E1-4DA6-9070-F71DEBA94826Q30009163-7939A326-CA82-489A-B367-555F1ADB3419Q30353837-7C9C6CF2-9DE2-4A68-A479-7E9862EADC4CQ30358110-9C835F4B-1676-4336-9048-36968DE8C432Q30358273-4EAA45D8-494F-4E48-BB53-B71120B3FD99Q30369668-A2AFF18A-AAEB-4B75-99E4-EA87098F73E9Q30371096-58ABA68C-EF5B-49F1-B6D3-95B590127894Q30373584-57E2F3F8-35E3-4A28-A302-4801536FD5FFQ30375879-4A034A28-A071-42D7-B3C4-090ECDA670F1Q30382087-EA07F52B-22A5-4D88-A5AC-580B56C74808Q30389094-CC86993F-7945-479A-A314-3077C238E20CQ30391354-4DE03603-E360-4C50-9D1C-C12DFF54751EQ30396232-D1B35F6E-595F-4C8E-A688-CC8A19A7F589Q30400256-D4F1446A-B713-4360-B102-6E3E2FF6DBB8Q30401462-88DE8BE5-0F95-400E-9AE4-B1B2A9D9EE62Q30412391-D61B00BD-05FA-455D-8A1D-ACCF1E000AD2Q30421203-2FA2DA5C-8804-47B9-A289-B118B1ED1D97Q30577133-1382D2F1-42B5-4313-A9CD-78640161235AQ30659119-798C5487-EF69-42CD-8921-9B0D9A3A4F62Q30698371-2F159009-8F86-452A-A2CE-2A3BA7408F71Q30908273-27B4D550-8077-46CC-91E1-3C5E8C0D5CBFQ30983595-440AA3B9-E569-4E25-B3C5-B3088E46FA53Q30984731-30EC6077-1470-415D-81BF-0E6159AD92C1Q31025559-8CAC83AB-885D-476E-975F-D9AD478A8280Q31028368-1F5DE2EA-7B6F-4304-8187-1612A46657BAQ31055925-9ACE8688-36B5-48D0-B8E0-0A340E4F6222
P2860
SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network
description
2010 nî lūn-bûn
@nan
2010 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
SPARTA+: a modest improvement ...... f an artificial neural network
@ast
SPARTA+: a modest improvement ...... f an artificial neural network
@en
SPARTA+: a modest improvement ...... f an artificial neural network
@nl
type
label
SPARTA+: a modest improvement ...... f an artificial neural network
@ast
SPARTA+: a modest improvement ...... f an artificial neural network
@en
SPARTA+: a modest improvement ...... f an artificial neural network
@nl
prefLabel
SPARTA+: a modest improvement ...... f an artificial neural network
@ast
SPARTA+: a modest improvement ...... f an artificial neural network
@en
SPARTA+: a modest improvement ...... f an artificial neural network
@nl
P2860
P3181
P1476
SPARTA+: a modest improvement ...... f an artificial neural network
@en
P2093
P2860
P2888
P3181
P356
10.1007/S10858-010-9433-9
P407
P577
2010-09-01T00:00:00Z
P5875
P6179
1006489921