3DLigandSite: predicting ligand-binding sites using similar structures - Wikidata - awgldk - TriplyDB

3DLigandSite: predicting ligand-binding sites using similar structures

3DLigandSite: predicting ligand-binding sites using similar structures

http://www.wikidata.org/entity/Q24621635

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Mating type gene homologues and putative sex pheromone-sensing pathway in arbuscular mycorrhizal fungi, a presumably asexual plant root symbiont A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods Modeling enzyme-ligand binding in drug discovery Structure of the signal transduction protein TRAP (target of RNAIII-activating protein)Structural insights into WcbI, a novel polysaccharide-biosynthesis enzyme bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming NADPH-cytochrome P450 reductase: molecular cloning and functional characterization of two paralogs from Withania somnifera (L.) dunal Characterization of a gene family encoding SEA (sea-urchin sperm protein, enterokinase and agrin)-domain proteins with lectin-like and heme-binding properties from Schistosoma japonicum A new F131V mutation in Chlamydomonas phytoene desaturase locates a cluster of norflurazon resistance mutations near the FAD-binding site in 3D protein models Cytochrome P450 monooxygenase CYP53 family in fungi: comparative structural and evolutionary analysis and its role as a common alternative anti-fungal drug target Computational analysis and low-scale constitutive expression of laccases synthetic genes GlLCC1 from Ganoderma lucidum and POXA 1B from Pleurotus ostreatus in Pichia pastoris Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms Optimization and Corroboration of the Regulatory Pathway of p42.3 Protein in the Pathogenesis of Gastric Carcinoma webPDBinder: a server for the identification of ligand binding sites on protein structures FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions Searching the protein structure database for ligand-binding site similarities using CPASS v.2 Variants in the Oxidoreductase PYROXD1 Cause Early-Onset Myopathy with Internalized Nuclei and Myofibrillar Disorganization Predictive characterization of hypothetical proteins in Staphylococcus aureus NCTC 8325 Protein ligand-specific binding residue predictions by an ensemble classifier The Phyre2 web portal for protein modeling, prediction and analysis Assessment of ligand binding site predictions in CASP10 An association-adjusted consensus deleterious scheme to classify homozygous Mis-sense mutations for personal genome interpretation Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.SDS, a structural disruption score for assessment of missense variant deleteriousness.EXIA2: web server of accurate and rapid protein catalytic residue prediction.I-TASSER server: new development for protein structure and function predictions The future of host cell protein (HCP) identification during process development and manufacturing linked to a risk-based management for their control.Assessment of ligand binding residue predictions in CASP8 Three-Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence-Structure Analysis of its Disease-Causing Variations.Comparative and evolutionary analysis of α-amylase gene across monocots and dicots.Why Is There a Glass Ceiling for Threading Based Protein Structure Prediction Methods?Computational approaches for de novo design and redesign of metal-binding sites on proteins GASS-WEB: a web server for identifying enzyme active sites based on genetic algorithms.Phosfinder: a web server for the identification of phosphate-binding sites on protein structures firestar--advances in the prediction of functionally important residues In Candida parapsilosis the ATC1 gene encodes for an acid trehalase involved in trehalose hydrolysis, stress resistance and virulence.PocketAnnotate: towards site-based function annotation.The FunFOLD2 server for the prediction of protein-ligand interactions.

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P2860

3DLigandSite: predicting ligand-binding sites using similar structures

http://www.wikidata.org/entity/Q24621635

description

2010 nî lūn-bûn

@nan

2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հուլիսին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

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2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

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name

3DLigandSite: predicting ligand-binding sites using similar structures

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3DLigandSite: predicting ligand-binding sites using similar structures

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3DLigandSite: predicting ligand-binding sites using similar structures

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type

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3DLigandSite: predicting ligand-binding sites using similar structures

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3DLigandSite: predicting ligand-binding sites using similar structures

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3DLigandSite: predicting ligand-binding sites using similar structures

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prefLabel

3DLigandSite: predicting ligand-binding sites using similar structures

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3DLigandSite: predicting ligand-binding sites using similar structures

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3DLigandSite: predicting ligand-binding sites using similar structures

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Nucleic Acids Research

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3DLigandSite: predicting ligand-binding sites using similar structures

@en

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Lawrence A Kelley

http://www.w3.org/2001/XMLSchema#string

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The Protein Data Bank

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Protein structure prediction on the Web: a case study using the Phyre server

Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

An evolutionary trace method defines binding surfaces common to protein families

The Universal Protein Resource (UniProt) 2009

Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

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W469-73

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scholarly article

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132133

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10.1093/NAR/GKQ406

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Web Server issue

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38

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Michael J Sternberg

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2010-05-31T00:00:00Z

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44640761

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20513649

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2896164

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