New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes - Wikidata - awgldk - TriplyDB

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

http://www.wikidata.org/entity/Q24632878

about

The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter"Widespread purifying selection on RNA structure in mammals A high-resolution map of human evolutionary constraint using 29 mammals GraphClust: alignment-free structural clustering of local RNA secondary structures Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention.Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease.Potential roles of microRNAs in regulating long intergenic noncoding RNAs.Finding the target sites of RNA-binding proteins.Adaptive regulation of testis gene expression and control of male fertility by the Drosophila hairpin RNA pathway. [Corrected].ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.Genome-wide identification of long noncoding RNAs in rat models of cardiovascular and renal disease Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori.From cis-regulatory elements to complex RNPs and back.The emerging role of triple helices in RNA biology.Probing-directed identification of novel structured RNAs.Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells Identification of expressed and conserved human noncoding RNAs.Genome-wide analysis of promoters: clustering by alignment and analysis of regular patterns.Using RNA inverse folding to identify IRES-like structural subdomains.From specific to global analysis of posttranscriptional regulation in eukaryotes: posttranscriptional regulatory networks.Mapping and significance of the mRNA methylome.Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.An efficient graph kernel method for non-coding RNA functional prediction.Impact of RNA structure on ZFP36L2 interaction with luteinizing hormone receptor mRNA.RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.Structural and Functional Annotation of Long Noncoding RNAs.BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.The identification and functional annotation of RNA structures conserved in vertebrates.Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics.Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila.Functional annotation of structural ncRNAs within enhancer RNAs in the human genome: implications for human disease.

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New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

http://www.wikidata.org/entity/Q24632878

description

2011 nî lūn-bûn

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2011 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2011 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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New families of human regulato ...... analysis of vertebrate genomes

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Genome Research

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New families of human regulato ...... analysis of vertebrate genomes

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Adam Roth

http://www.w3.org/2001/XMLSchema#string

Brian J Parker

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P2860

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Most "dark matter" transcripts are associated with known genes

Identification and classification of conserved RNA secondary structures in the human genome

2-D structure of the A region of Xist RNA and its implication for PRC2 association

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

RNA destabilization by the granulocyte colony-stimulating factor stem-loop destabilizing element involves a single stem-loop that promotes deadenylation.

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Noncoding RNA gene detection using comparative sequence analysis

Fast and reliable prediction of noncoding RNAs

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scholarly article

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10.1101/GR.112516.110

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11

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Stefan Washietl

Jakob Skou Pedersen

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51711782

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21994249

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3205577

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