Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts - Wikidata - awgldk - TriplyDB

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

http://www.wikidata.org/entity/Q24633132

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Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens Specificity and nonspecificity in RNA-protein interactions RNA-binding proteins involved in post-transcriptional regulation in bacteria Riboregulation in plant-associated α-proteobacteria Cis-encoded non-coding antisense RNAs in streptococci and other low GC Gram (+) bacterial pathogens Regulation by small RNAs in bacteria: expanding frontiers Applications of High-Throughput Sequencing for In Vitro Selection and Characterization of Aptamers Aptamer-Based Technologies in Foodborne Pathogen Detection Genome-wide analyses of small non-coding RNAs in streptococci The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica Hfq and its constellation of RNA Monitoring genomic sequences during SELEX using high-throughput sequencing: neutral SELEX.Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation.An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs Association of RNAs with Bacillus subtilis Hfq.Structural model of an mRNA in complex with the bacterial chaperone Hfq.Identifying and characterizing Hfq-RNA interactions.Rapid binding and release of Hfq from ternary complexes during RNA annealing Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.Hfq proximity and orientation controls RNA annealing.Can we observe changes in mRNA "state"? Overview of methods to study mRNA interactions with regulatory proteins relevant in cancer related processes.cis-antisense RNA, another level of gene regulation in bacteria.Finding aptamers and small ribozymes in unexpected places.Synthetic RNA silencing in bacteria - antimicrobial discovery and resistance breaking.The bacterial protein Hfq: much more than a mere RNA-binding factor.Cycling of RNAs on Hfq.Structure and RNA-binding properties of the bacterial LSm protein Hfq.Riboregulators and the role of Hfq in photosynthetic bacteria.RNA binding by Hfq and ring-forming (L)Sm proteins: a trade-off between optimal sequence readout and RNA backbone conformation.Revealing protein-lncRNA interaction Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate.RNAs actively cycle on the Sm-like protein Hfq.Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents.Analysis of the regulated transcriptome of Neisseria meningitidis in human blood using a tiling array.Hidden specificity in an apparently nonspecific RNA-binding protein.Antagonistic functions between the RNA chaperone Hfq and an sRNA regulate sensitivity to the antibiotic colicin.Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria.

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P2860

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

http://www.wikidata.org/entity/Q24633132

description

2010 nî lūn-bûn

@nan

2010 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հունիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

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2010年論文

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2010年论文

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name

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

@ast

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

@en

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

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type

label

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

@ast

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

@en

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

@nl

prefLabel

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

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Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

@en

Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

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Genomic SELEX for Hfq-binding ...... antly in antisense transcripts

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A von Haeseler

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B Zimmermann

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C Lorenz

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C Waldsich

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I Bilusic

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L Rajkowitsch

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R Schroeder

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P2860

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

Hfq is necessary for regulation by the untranslated RNA DsrA

GadY, a small-RNA regulator of acid response genes in Escherichia coli

Regulatory RNAs in bacteria

Identification of novel small RNAs using comparative genomics and microarrays

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

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3568907

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10.1093/NAR/GKQ032

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11

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38

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20348540

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2887942

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