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The transcriptional landscape of the yeast genome defined by RNA sequencing

The transcriptional landscape of the yeast genome defined by RNA sequencing

http://www.wikidata.org/entity/Q24633693

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Most "dark matter" transcripts are associated with known genes Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle Differential expression analysis for sequence count data Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13 De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas)An algorithm for chemical genomic profiling that minimizes batch effects: bucket evaluations Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease Repetitive DNA and next-generation sequencing: computational challenges and solutions Proto-genes and de novo gene birth RNA-Seq: a revolutionary tool for transcriptomics Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea Optimization of de novo transcriptome assembly from next-generation sequencing data Small RNA diversity in plants and its impact in development Integrative analysis of the melanoma transcriptome Yeast targets for mRNA methylation RNA sequencing: platform selection, experimental design, and data interpretation YPA: an integrated repository of promoter features in Saccharomyces cerevisiae Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs Genome-wide annotation and quantitation of translation by ribosome profiling Construction of normalized RNA-seq libraries for next-generation sequencing using the crab duplex-specific nuclease Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing Biases in Illumina transcriptome sequencing caused by random hexamer priming Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data The transcriptionally active regions in the genome of Bacillus subtilis Annotating genomes with massive-scale RNA sequencing Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research

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The transcriptional landscape of the yeast genome defined by RNA sequencing

http://www.wikidata.org/entity/Q24633693

description

2008 nî lūn-bûn

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2008 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2008 թվականի հունիսին հրատարակված գիտական հոդված

@hy

2008年の論文

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2008年論文

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2008年論文

@zh-hant

2008年論文

@zh-hk

2008年論文

@zh-mo

2008年論文

@zh-tw

2008年论文

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name

The transcriptional landscape of the yeast genome defined by RNA sequencing

@ast

The transcriptional landscape of the yeast genome defined by RNA sequencing

@en

The transcriptional landscape of the yeast genome defined by RNA sequencing

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type

label

The transcriptional landscape of the yeast genome defined by RNA sequencing

@ast

The transcriptional landscape of the yeast genome defined by RNA sequencing

@en

The transcriptional landscape of the yeast genome defined by RNA sequencing

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prefLabel

The transcriptional landscape of the yeast genome defined by RNA sequencing

@ast

The transcriptional landscape of the yeast genome defined by RNA sequencing

@en

The transcriptional landscape of the yeast genome defined by RNA sequencing

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The transcriptional landscape of the yeast genome defined by RNA sequencing

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Chong Shou

http://www.w3.org/2001/XMLSchema#string

Debasish Raha

http://www.w3.org/2001/XMLSchema#string

Karl Waern

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Michael Snyder

http://www.w3.org/2001/XMLSchema#string

Ugrappa Nagalakshmi

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Zhong Wang

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P2860

What is a gene, post-ENCODE? History and updated definition

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

Sequencing and comparison of yeast species to identify genes and regulatory elements

Long-range heterogeneity at the 3' ends of human mRNAs

Untranslated regions of mRNAs.

Large-scale analysis of the yeast genome by transposon tagging and gene disruption.

Mapping pathways and phenotypes by systematic gene overexpression.

The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames.

Dissecting the regulatory circuitry of a eukaryotic genome

Alternative polyadenylation events contribute to the induction of NF-ATc in effector T cells

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10.1126/SCIENCE.1158441

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5881

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320

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Mark Bender Gerstein

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2008-06-06T00:00:00Z

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5401897

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18451266

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