Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles
about
A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion moleculePremature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuationComparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomesDual RNA regulatory control of a Staphylococcus aureus virulence factorAnalysis of the small RNA transcriptional response in multidrug-resistant Staphylococcus aureus after antimicrobial exposureNAPP: the Nucleic Acid Phylogenetic Profile DatabaseExperimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolismA search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulationLineage-specific conserved noncoding sequences of plant genomes: their possible role in nucleosome positioningTranscriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genusCsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formersCartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditionsMissing genes in the annotation of prokaryotic genomesGenome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3The Staphylococcus aureus RNome and its commitment to virulence.Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis.Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to applicationAn in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strainsThe expression of small regulatory RNAs in clinical samples reflects the different life styles of Staphylococcus aureus in colonization vs. infection.A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureusExploration of noncoding sequences in metagenomes.A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalisGenome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regionsComparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range.Assessing computational tools for the discovery of small RNA genes in bacteriaSingle nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiaeStaphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus.Predicting sRNAs and their targets in bacteria.Transcriptomic analysis of staphylococcal sRNAs: insights into species-specific adaption and the evolution of pathogenesis.Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus.Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria.Small regulatory RNAs from low-GC Gram-positive bacteria.The modulation of Staphylococcus aureus mRNA turnoverSRD: a Staphylococcus regulatory RNA database.Epidemiology and virulence insights from MRSA and MSSA genome analysis.Characterizing the transcriptional adaptation of Staphylococcus aureus to stationary phase growth.Comparative RNA Genomics.Assessment of Bona Fide sRNAs in Staphylococcus aureus.SsrA (tmRNA) acts as an antisense RNA to regulate Staphylococcus aureus pigment synthesis by base pairing with crtMN mRNA.
P2860
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P2860
Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles
description
2009 nî lūn-bûn
@nan
2009 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2009年の論文
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2009年学术文章
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2009年学术文章
@zh-cn
2009年学术文章
@zh-hans
2009年学术文章
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2009年学术文章
@zh-sg
2009年學術文章
@yue
name
Single-pass classification of ...... me using phylogenetic profiles
@ast
Single-pass classification of ...... me using phylogenetic profiles
@en
Single-pass classification of ...... me using phylogenetic profiles
@nl
type
label
Single-pass classification of ...... me using phylogenetic profiles
@ast
Single-pass classification of ...... me using phylogenetic profiles
@en
Single-pass classification of ...... me using phylogenetic profiles
@nl
prefLabel
Single-pass classification of ...... me using phylogenetic profiles
@ast
Single-pass classification of ...... me using phylogenetic profiles
@en
Single-pass classification of ...... me using phylogenetic profiles
@nl
P2860
P50
P3181
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P1476
Single-pass classification of ...... me using phylogenetic profiles
@en
P2093
Magali Naville
P2860
P304
P3181
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10.1101/GR.089714.108
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P577
2009-02-23T00:00:00Z