RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes - Wikidata - awgldk - TriplyDB

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

http://www.wikidata.org/entity/Q24675325

about

Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes TFinDit: transcription factor-DNA interaction data depository Regulatory network operations in the Pathway Tools software.Salmonella typhimurium PtsJ is a novel MocR-like transcriptional repressor involved in regulating the vitamin B6 salvage pathway.Orthologous transcription factors in bacteria have different functions and regulate different genes.A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli.MTAP: the motif tool assessment platform.Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva MicrobesOnline: an integrated portal for comparative and functional genomics RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.CodY Regulates Thiol Peroxidase Expression as Part of the Pneumococcal Defense Mechanism against H2O2 Stress.Local gene regulation details a recognition code within the LacI transcriptional factor family.Three enhancements to the inference of statistical protein-DNA potentials.RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes.Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence.PePPER: a webserver for prediction of prokaryote promoter elements and regulons Pleiotropic functions of catabolite control protein CcpA in Butanol-producing Clostridium acetobutylicum Genomic repertoires of DNA-binding transcription factors across the tree of life.On the power and limits of evolutionary conservation--unraveling bacterial gene regulatory networks.Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.MGcV: the microbial genomic context viewer for comparative genome analysis.Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution.Quantitative proteomics reveals the temperature-dependent proteins encoded by a series of cluster genes in thermoanaerobacter tengcongensis.Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.Transcription factor MrpC binds to promoter regions of hundreds of developmentally-regulated genes in Myxococcus xanthus Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system.Identification of Position-Specific Correlations between DNA-Binding Domains and Their Binding Sites. Application to the MerR Family of Transcription Factors.RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks.Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.Predicting transcription factor specificity with all-atom models.Engineering transcription factors with novel DNA-binding specificity using comparative genomics Regulation by transcription factors in bacteria: beyond description DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

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P2860

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

http://www.wikidata.org/entity/Q24675325

description

2007 nî lūn-bûn

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2007 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2007年の論文

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2007年論文

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name

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RegTransBase--a database of re ...... e range of prokaryotic genomes

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Nucleic Acids Research

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RegTransBase--a database of re ...... e range of prokaryotic genomes

@en

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Alexei E Kazakov

http://www.w3.org/2001/XMLSchema#string

Andrey A Mironov

http://www.w3.org/2001/XMLSchema#string

Dmitry V Vinogradov

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Inna Dubchak

http://www.w3.org/2001/XMLSchema#string

Pavel S Novichkov

http://www.w3.org/2001/XMLSchema#string

Simon Minovitsky

http://www.w3.org/2001/XMLSchema#string

P2860

ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms

The COG database: an updated version includes eukaryotes

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

The Bioperl toolkit: Perl modules for the life sciences

The generic genome browser: a building block for a model organism system database

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes

Database resources of the National Center for Biotechnology Information

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

The integrated microbial genomes (IMG) system

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scholarly article

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378766

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10.1093/NAR/GKL865

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Database issue

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35

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Michael J Cipriano

Mikhail Gelfand

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2007-01-01T00:00:00Z

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