Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation - Wikidata - awgldk - TriplyDB

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

http://www.wikidata.org/entity/Q24675776

about

Comparative genomics search for losses of long-established genes on the human lineage Retrotransposition of gene transcripts leads to structural variation in mammalian genomes The GENCODE pseudogene resource On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE Both selective and neutral processes drive GC content evolution in the human genome Computational Identification of Novel Genes: Current and Future Perspectives The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics hsp70 genes in the human genome: Conservation and differentiation patterns predict a wide array of overlapping and specialized functions Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals Origin of primate orphan genes: a comparative genomics approach Filtering for compound heterozygous sequence variants in non-consanguineous pedigrees Comparative analysis of pseudogenes across three phyla Expressed pseudogenes in the transcriptional landscape of human cancers Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data 29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome Human developmental enhancers conserved between deuterostomes and protostomes Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project On the quest for selective constraints shaping the expressivity of the genes casting retropseudogenes in human Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes Strong association between pseudogenization mechanisms and gene sequence length Assessing the genomic evidence for conserved transcribed pseudogenes under selection Using semantic web rules to reason on an ontology of pseudogenes Small RNAs originated from pseudogenes: cis- or trans-acting?Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons PseudoGeneQuest - service for identification of different pseudogene types in the human genome NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation Flexible Data Analysis Pipeline for High-Confidence Proteogenomics.H-InvDB in 2009: extended database and data mining resources for human genes and transcripts Similarly strong purifying selection acts on human disease genes of all evolutionary ages.The extinction dynamics of bacterial pseudogenes.Pseudogenes as an alternative source of natural antisense transcripts.A beginner's guide to eukaryotic genome annotation.Solving the Problem: Genome Annotation Standards before the Data Deluge.Widespread uncoupling between transcriptome and translatome variations after a stimulus in mammalian cells.Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes Pseudogene in cancer: real functions and promising signature.

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Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

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P2860

Gene losses during human origins

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

Identification of pseudogenes in the Drosophila melanogaster genome

Organization of heterogeneous scientific data using the EAV/CR representation

A genome-wide survey of human pseudogenes

Reevaluating human gene annotation: a second-generation analysis of chromosome 22

UniProt: the Universal Protein knowledgebase

The human genome browser at UCSC

Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.

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Database issue

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35

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