Atomic solvation parameters applied to molecular dynamics of proteins in solution - Wikidata - awgldk - TriplyDB

Atomic solvation parameters applied to molecular dynamics of proteins in solution

Atomic solvation parameters applied to molecular dynamics of proteins in solution

http://www.wikidata.org/entity/Q24676145

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A computational study of RNA binding and specificity in the tandem zinc finger domain of TIS11d CHARMM: the biomolecular simulation program Biomolecular electrostatics and solvation: a computational perspective Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils The Role of Nonconserved Residues of Archaeoglobus fulgidus Ferritin on Its Unique Structure and Biophysical Properties Effective energy function for proteins in solution Evaluation of a fast implicit solvent model for molecular dynamics simulations Understanding the basis of a class of paradoxical mutations in AraC through simulations Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation terms Evaluating CASP4 predictions with physical energy functions.Identifying residue-residue clashes in protein hybrids by using a second-order mean-field approach.Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design.Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions Prediction of binding hot spot residues by using structural and evolutionary parameters.A new computational model for protein folding based on atomic solvation.The three-dimensional profile method using residue preference as a continuous function of residue environment Protein design automation.A new method for modeling large-scale rearrangements of protein domains.Multiobjective evolutionary algorithm with many tables for purely ab initio protein structure prediction.On the Dielectric "Constant" of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation Free energy based populations of interconverting microstates of a cyclic peptide lead to the experimental NMR data.Simulation study of the structure and dynamics of the Alzheimer's amyloid peptide congener in solution.Probing the origins of increased activity of the E22Q "Dutch" mutant Alzheimer's beta-amyloid peptide.Benchmarking implicit solvent folding simulations of the amyloid beta(10-35) fragment Automated docking and the search for HIV protease inhibitors.ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble.ASPDock: protein-protein docking algorithm using atomic solvation parameters model Prediction of protein-protein interaction sites using electrostatic desolvation profiles.Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome.Synthesis, bioactivity, 3D-QSAR studies of novel dibenzofuran derivatives as PTP-MEG2 inhibitors.Derivatives of molecular surface area and volume: simple and exact analytical formulas.Mechanism of the pH-Controlled Self-Assembly of Nanofibers from Peptide Amphiphiles Long time dynamics of Met-enkephalin: comparison of explicit and implicit solvent models.Solvation model dependency of helix-coil transition in polyalanine Theoretical and experimental study of the D2194G mutation in the C2 domain of coagulation factor V.Water dynamics and dewetting transitions in the small mechanosensitive channel MscS.Novel insights of structure-based modeling for RNA-targeted drug discovery.

P2860

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P2860

Atomic solvation parameters applied to molecular dynamics of proteins in solution

http://www.wikidata.org/entity/Q24676145

description

1992 nî lūn-bûn

@nan

1992 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

1992 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

1992年の論文

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1992年論文

@yue

1992年論文

@zh-hant

1992年論文

@zh-hk

1992年論文

@zh-mo

1992年論文

@zh-tw

1992年论文

@wuu

name

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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Atomic solvation parameters applied to molecular dynamics of proteins in solution

@en

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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type

label

Atomic solvation parameters applied to molecular dynamics of proteins in solution

@ast

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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Atomic solvation parameters applied to molecular dynamics of proteins in solution

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prefLabel

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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Atomic solvation parameters applied to molecular dynamics of proteins in solution

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Atomic solvation parameters applied to molecular dynamics of proteins in solution

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P1476

Atomic solvation parameters applied to molecular dynamics of proteins in solution

@en

P2093

D Eisenberg

http://www.w3.org/2001/XMLSchema#string

L Wesson

http://www.w3.org/2001/XMLSchema#string

P2860

Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides

A simple method for displaying the hydropathic character of a protein

The refinement and the structure of the dimer of alpha-chymotrypsin at 1.67-A resolution

The interpretation of protein structures: estimation of static accessibility

The Protein Data Bank: a computer-based archival file for macromolecular structures

Some factors in the interpretation of protein denaturation

Areas, volumes, packing and protein structure

Solvation energy in protein folding and binding

Analytical approximation to the accessible surface area of proteins.

Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor.

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227-35

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scholarly article

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4047290

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10.1002/PRO.5560010204

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2

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1

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21850610

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1304905

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molecular dynamics simulation

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2142195

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