Sequence dependence of cross-hybridization on short oligo microarrays. - Wikidata - awgldk - TriplyDB

Sequence dependence of cross-hybridization on short oligo microarrays.

Sequence dependence of cross-hybridization on short oligo microarrays.

http://www.wikidata.org/entity/Q24794389

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Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations Reliability and reproducibility issues in DNA microarray measurements Correction of spatial bias in oligonucleotide array data.Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data.Analysis of probe level patterns in Affymetrix microarray data.Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction.On the reproducibility of TCGA ovarian cancer microRNA profiles.Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays.In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation Probe signal correction for differential methylation hybridization experiments.Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays.Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.Resolving deconvolution ambiguity in gene alternative splicing.A robust method for estimating gene expression states using Affymetrix microarray probe level data PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays.Development of a physical model-based algorithm for the detection of single-nucleotide substitutions by using tiling microarrays.Transcriptomes of the B and T lineages compared by multiplatform microarray profiling.Towards the uniform distribution of null P values on Affymetrix microarrays.A short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities.Cross-hybridization modeling on Affymetrix exon arrays.Specific mutation screening of TP53 gene by low-density DNA microarray Differential regulation of Listeria monocytogenes internalin and internalin-like genes by sigmaB and PrfA as revealed by subgenomic microarray analyses.An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.ChipCheckII - predicting binding curves for multiple analyte strands on small DNA microarrays.An in vitro selection scheme for oligonucleotide probes to discriminate between closely related DNA sequences.A model of base-call resolution on broad-spectrum pathogen detection resequencing DNA microarrays Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide.Relationship between gene expression and observed intensities in DNA microarrays--a modeling study.Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.Sequence characteristics define trade-offs between on-target and genome-wide off-target hybridization of oligoprobes.Reply to “Comment on ‘Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays’”Replacing cRNA targets with cDNA reduces microarray cross-hybridization

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P2860

Sequence dependence of cross-hybridization on short oligo microarrays.

http://www.wikidata.org/entity/Q24794389

description

2005 nî lūn-bûn

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2005 թուականի Մայիսին հրատարակուած գիտական յօդուած

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Sequence dependence of cross-hybridization on short oligo microarrays

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Sequence dependence of cross-hybridization on short oligo microarrays.

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Sequence dependence of cross-hybridization on short oligo microarrays

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Sequence dependence of cross-hybridization on short oligo microarrays.

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Sequence dependence of cross-hybridization on short oligo microarrays.

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Sequence dependence of cross-hybridization on short oligo microarrays

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Sequence dependence of cross-hybridization on short oligo microarrays.

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Sequence dependence of cross-hybridization on short oligo microarrays.

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Nucleic Acids Research

P1476

Sequence dependence of cross-hybridization on short oligo microarrays.

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P2093

Chunlei Wu

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Li Zhang

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Roberto Carta

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P2860

XHM: a system for detection of potential cross hybridizations in DNA microarrays

Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis

Basic local alignment search tool

Expression monitoring by hybridization to high-density oligonucleotide arrays

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

Molecular interactions on microarrays

A direct glimpse of cross-hybridization: background-passified microarrays that allow mass-spectrometric detection of captured oligonucleotides.

Electrostatic surface plasmon resonance: direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches

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10.1093/NAR/GNI082

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