Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila - Wikidata - awgldk - TriplyDB

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

http://www.wikidata.org/entity/Q24796663

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FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system Stubb: a program for discovery and analysis of cis-regulatory modules TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.Formation of regulatory modules by local sequence duplication Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.Statistical significance of cis-regulatory modules.Finding regulatory elements and regulatory motifs: a general probabilistic framework.Fine-tuning enhancer models to predict transcriptional targets across multiple genomes SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions.Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.PhyloGibbs-MP: module prediction and discriminative motif-finding by Gibbs sampling Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species Evolution of regulatory sequences in 12 Drosophila species.Identifying regulatory elements in eukaryotic genomes.Identifying cis-regulatory sequences by word profile similarity The complex spatio-temporal regulation of the Drosophila myoblast attractant gene duf/kirre.Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials.Assessing computational methods of cis-regulatory module prediction.Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor.Multi-species comparative analysis of the equine ACE gene identifies a highly conserved potential transcription factor binding site in intron 16.A cis-regulatory sequence within the yellow locus of Drosophila melanogaster required for normal male mating success.D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation Genome Surveyor 2.0: cis-regulatory analysis in Drosophila Identifying transcriptional cis-regulatory modules in animal genomes.Genome scan for cis-regulatory DNA motifs associated with social behavior in honey bees.Identification and computational analysis of gene regulatory elements.Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules.Identification of motifs that are conserved in 12 Drosophila species and regulate midline glia vs. neuron expression Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle.Multigenome DNA sequence conservation identifies Hox cis-regulatory elements.Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences Boolean implication networks derived from large scale, whole genome microarray datasets.Genomic approaches towards finding cis-regulatory modules in animals MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs.Identifying cis-regulatory elements by statistical analysis and phylogenetic footprinting and analyzing their coexistence and related gene ontology.

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Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

http://www.wikidata.org/entity/Q24796663

description

2004 nî lūn-bûn

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2004 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2004 թվականի սեպտեմբերին հրատարակված գիտական հոդված

@hy

2004年の論文

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2004年論文

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2004年論文

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2004年論文

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2004年論文

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2004年論文

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2004年论文

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name

Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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type

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Cross-species comparison signi ...... gulatory modules in Drosophila

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1471-2105-5-129

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BMC Bioinformatics

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Cross-species comparison signi ...... gulatory modules in Drosophila

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Eric D Siggia

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Mark D Schroeder

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Saurabh Sinha

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P2860

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

The regulatory content of intergenic DNA shapes genome architecture

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.

Conservation of regulatory elements between two species of Drosophila

Transcriptional control in the segmentation gene network of Drosophila

Tandem repeats finder: a program to analyze DNA sequences

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

An evolutionary analysis of orphan genes in Drosophila.

In and out of Torso RTK signalling.

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129

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Ulrich Unnerstall

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8356014

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1027517871

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15357878

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521067

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