Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
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Hybridization interactions between probesets in short oligo microarrays lead to spurious correlationsReliability and reproducibility issues in DNA microarray measurementsThe MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurementsEstrogen receptor alpha controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAsReview of the literature examining the correlation among DNA microarray technologiesThe end of the microarray Tower of Babel: will universal standards lead the way?Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB familyIntegrative computational biology for cancer researchCorrection of spatial bias in oligonucleotide array data.Improved precision and accuracy for microarrays using updated probe set definitions.GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAsSequence biases in large scale gene expression profiling data.Three methods for optimization of cross-laboratory and cross-platform microarray expression data.Analysis of probe level patterns in Affymetrix microarray data.An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data.On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation.Comparison of the latest commercial short and long oligonucleotide microarray technologies.Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platformsAn analysis of intra array repeats: the good, the bad and the non informative.Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression.Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarraysA detailed transcript-level probe annotation reveals alternative splicing based microarray platform differencesA gene expression bar code for microarray data.Novel definition files for human GeneChips based on GeneAnnot.Physiology, pathology and relatedness of human tissues from gene expression meta-analysis.Salvaging Affymetrix probes after probe-level re-annotationKey issues in conducting a meta-analysis of gene expression microarray datasets.Bioinformatic and statistical analysis of the optic nerve head in a primate model of ocular hypertension.Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.Comparison of gene expression profile in embryonic mesencephalon and neuronal primary culturesEvaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples.Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis.Consistent annotation of gene expression arraysComparison and consolidation of microarray data sets of human tissue expression.Cross-platform expression microarray performance in a mouse model of mitochondrial disease therapy.Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: transcriptional dynamics and regulatory structures.ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFsExpectations, validity, and reality in gene expression profiling.Empirical comparison of cross-platform normalization methods for gene expression dataJetset: selecting the optimal microarray probe set to represent a gene.
P2860
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P2860
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
description
2005 nî lūn-bûn
@nan
2005 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Redefinition of Affymetrix pro ...... d gene expression measurements
@nl
Redefinition of Affymetrix pro ...... gene expression measurements.
@ast
Redefinition of Affymetrix pro ...... gene expression measurements.
@en
type
label
Redefinition of Affymetrix pro ...... d gene expression measurements
@nl
Redefinition of Affymetrix pro ...... gene expression measurements.
@ast
Redefinition of Affymetrix pro ...... gene expression measurements.
@en
prefLabel
Redefinition of Affymetrix pro ...... d gene expression measurements
@nl
Redefinition of Affymetrix pro ...... gene expression measurements.
@ast
Redefinition of Affymetrix pro ...... gene expression measurements.
@en
P2860
P50
P356
P1433
P1476
Redefinition of Affymetrix pro ...... gene expression measurements.
@en
P2093
Brigham H Mecham
Scott L Carter
P2860
P2888
P356
10.1186/1471-2105-6-107
P407
P577
2005-04-25T00:00:00Z
P5875
P6179
1053069799