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Allele-specific amplification in cancer revealed by SNP array analysis

Allele-specific amplification in cancer revealed by SNP array analysis

http://www.wikidata.org/entity/Q24811573

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Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations Functional polymorphism of the CK2alpha intronless gene plays oncogenic roles in lung cancer The application of single nucleotide polymorphism microarrays in cancer research CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.Genome wide SNP comparative analysis between EGFR and KRAS mutated NSCLC and characterization of two models of oncogenic cooperation in non-small cell lung carcinoma The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation Quantification of normal cell fraction and copy number neutral LOH in clinical lung cancer samples using SNP array data A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.Mismatch and G-stack modulated probe signals on SNP microarrays.QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data.A molecular scheme for improved characterization of human embryonic stem cell lines Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation.SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels.Major copy proportion analysis of tumor samples using SNP arrays.An integrated epigenetic and genetic analysis of DNA methyltransferase genes (DNMTs) in tumor resistant and susceptible chicken lines.Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.Estimation of tumor heterogeneity using CGH array data.Oncogene mutations, copy number gains and mutant allele specific imbalance (MASI) frequently occur together in tumor cells.PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data.TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays An integrated Bayesian analysis of LOH and copy number data.Allelic selection of amplicons in glioblastoma revealed by combining somatic and germline analysis.A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays.Making sense of cancer genomic data.Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma.Calling amplified haplotypes in next generation tumor sequence data.Common alleles in candidate susceptibility genes associated with risk and development of epithelial ovarian cancer.Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors Human spermatogenic failure purges deleterious mutation load from the autosomes and both sex chromosomes, including the gene DMRT1.Differences help recognition: a probabilistic interpretation Microarray MAPH: accurate array-based detection of relative copy number in genomic DNA.Cancer gene discovery in mouse and man.A Likelihood-Based Framework for Association Analysis of Allele-Specific Copy Numbers.Parent-specific copy number in paired tumor-normal studies using circular binary segmentation Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.DNA copy number variation and loss of heterozygosity in relation to recurrence of and survival from head and neck squamous cell carcinoma: a review.Genome-Wide Loss of Heterozygosity and DNA Copy Number Aberration in HPV-Negative Oral Squamous Cell Carcinoma and Their Associations with Disease-Specific Survival.

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Allele-specific amplification in cancer revealed by SNP array analysis

http://www.wikidata.org/entity/Q24811573

description

2005 nî lūn-bûn

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2005 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2005 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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name

Allele-specific amplification in cancer revealed by SNP array analysis

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Allele-specific amplification in cancer revealed by SNP array analysis

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Allele-specific amplification in cancer revealed by SNP array analysis

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type

label

Allele-specific amplification in cancer revealed by SNP array analysis

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Allele-specific amplification in cancer revealed by SNP array analysis

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Allele-specific amplification in cancer revealed by SNP array analysis

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prefLabel

Allele-specific amplification in cancer revealed by SNP array analysis

@ast

Allele-specific amplification in cancer revealed by SNP array analysis

@en

Allele-specific amplification in cancer revealed by SNP array analysis

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JOURNAL.PCBI.0010065

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PLOS Computational Biology

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Allele-specific amplification in cancer revealed by SNP array analysis

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Barbara A Weir

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Cheng Li

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David Harrington

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Rameen Beroukhim

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Thomas LaFramboise

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William R Sellers

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Xiaojun Zhao

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Mutation and cancer: statistical study of retinoblastoma

A census of human cancer genes

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy.

The structure of haplotype blocks in the human genome

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

Detection of large-scale variation in the human genome

Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation

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10.1371/JOURNAL.PCBI.0010065

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Matthew Meyerson

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7445860

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16322765

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1289392

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