Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes - Wikidata - awgldk - TriplyDB

Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes

Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes

http://www.wikidata.org/entity/Q25256829

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Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil.Multiple genome alignment for identifying the core structure among moderately related microbial genomes.Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1 MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes.MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.A novel hierarchical clustering algorithm for gene sequences Evolution and diversity of periplasmic proteins involved in copper homeostasis in gamma proteobacteria.A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands.MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups Evolution at the subgene level: domain rearrangements in the Drosophila phylogeny Functional Classification of Uncultured "Candidatus Caldiarchaeum subterraneum" Using the Maple System.A New Comparative-Genomics Approach for Defining Phenotype-Specific Indicators Reveals Specific Genetic Markers in Predatory Bacteria.Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori Chromosome painting in silico in a bacterial species reveals fine population structure Complete genome sequence of Macrococcus caseolyticus strain JCSCS5402, [corrected] reflecting the ancestral genome of the human-pathogenic staphylococci.Genomic Basis for Methicillin Resistance in Staphylococcus aureus High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes Ortholog Identification and Comparative Analysis of Microbial Genomes Using MBGD and RECOG.Population Evolution of Helicobacter pylori through Diversification in DNA Methylation and Interstrain Sequence Homogenization.Complete genome and gene expression analyses of Asaia bogorensis reveal unique responses to culture with mammalian cells as a potential opportunistic human pathogen.Low frequency of endospore-specific genes in subseafloor sedimentary metagenomes.Artificial acceleration of mammalian cell reprogramming by bacterial proteins.Multi-gene phylogenetic analysis reveals that shochu-fermenting Saccharomyces cerevisiae strains form a distinct sub-clade of the Japanese sake cluster.ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements.Automatic identification of optimal marker genes for phenotypic and taxonomic groups of microorganisms.

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Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes

http://www.wikidata.org/entity/Q25256829

description

2006 nî lūn-bûn

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2006 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2006年の論文

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name

Hierarchical clustering algori ...... sification in multiple genomes

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Hierarchical clustering algori ...... sification in multiple genomes

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Hierarchical clustering algori ...... sification in multiple genomes

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Hierarchical clustering algori ...... sification in multiple genomes

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Hierarchical clustering algori ...... sification in multiple genomes

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Hierarchical clustering algori ...... sification in multiple genomes

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Hierarchical clustering algori ...... sification in multiple genomes

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Nucleic Acids Research

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Hierarchical clustering algori ...... sification in multiple genomes

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Ikuo Uchiyama

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P2860

The COG database: an updated version includes eukaryotes

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

SMART, a simple modular architecture research tool: identification of signaling domains

The COG database: new developments in phylogenetic classification of proteins from complete genomes

The use of gene clusters to infer functional coupling

RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs.

OrthoParaMap: distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies

The high-resolution crystal structure of the molybdate-dependent transcriptional regulator (ModE) from Escherichia coli: a novel combination of domain folds

Identification of common molecular subsequences

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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647-658

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10.1093/NAR/GKJ448

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34

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16436801

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1351371

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