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Ensemble Refinement of Protein Crystal Structures: Validation and Application

Ensemble Refinement of Protein Crystal Structures: Validation and Application

http://www.wikidata.org/entity/Q27648076

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Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2 Physiological implications of arginine metabolism in plants Crystallographic model validation: from diagnosis to healing Structure of TTHA1623, a novel metallo-β-lactamase superfamily protein fromThermus thermophilusHB8 Structural and functional characterization ofSalmonella entericaserovar Typhimurium YcbL: An unusual Type II glyoxalase Comparison of NMR and crystal structures for the proteins TM1112 and TM1367 Structural insights into lipid-dependent reversible dimerization of human GLTP Medicago truncatulahistidine-containing phosphotransfer protein Automated identification of functional dynamic contact networks from X-ray crystallography Protein structural ensembles are revealed by redefining X-ray electron density noise The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures The 2/2 hemoglobin from the cyanobacterium Synechococcus sp. PCC 7002 with covalently attached heme: comparison of X-ray and NMR structures Insights into the structure and function of fungal β-mannosidases from glycoside hydrolase family 2 based on multiple crystal structures of the Trichoderma harzianum enzyme Identifying and Visualizing Macromolecular Flexibility in Structural Biology Integrative, dynamic structural biology at atomic resolution--it's about time Evolution of the key alkaloid enzyme putrescine N-methyltransferase from spermidine synthase Activity Regulation by Heteromerization of Arabidopsis Allene Oxide Cyclase Family Members Flexible backbone sampling methods to model and design protein alternative conformations Ensemble MD simulations restrained via crystallographic data: accurate structure leads to accurate dynamics The Center for Eukaryotic Structural Genomics.Residue-level global and local ensemble-ensemble comparisons of protein domains.Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure.The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding Active site and laminarin binding in glycoside hydrolase family 55 Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment.Alternate states of proteins revealed by detailed energy landscape mapping Mining electron density for functionally relevant protein polysterism in crystal structures.Protein structure along the order-disorder continuum Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles.Identifying proteins that can form tyrosine-cysteine crosslinks.On the variability of experimental data in macromolecular crystallography Application of elastic network models to proteins in the crystalline state.Resolution of structural heterogeneity in dynamic crystallography.Exploring structural variability in X-ray crystallographic models using protein local optimization by torsion-angle sampling Systematic comparison of crystal and NMR protein structures deposited in the protein data bank.Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers.Structural variability and the incoherent addition of scattered intensities in single-particle diffraction.phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics.Evidence of functional protein dynamics from X-ray crystallographic ensembles.New insight into the dynamic properties and the active site architecture of H-Ras p21 revealed by X-ray crystallography at very high resolution

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P2860

Ensemble Refinement of Protein Crystal Structures: Validation and Application

http://www.wikidata.org/entity/Q27648076

description

2007 nî lūn-bûn

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2007 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2007 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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type

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Ensemble Refinement of Protein Crystal Structures: Validation and Application

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Dmitry A Kondrashov

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Elena J Levin

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Gary E Wesenberg

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George N Phillips

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P2860

Direct observation of base-pair stepping by RNA polymerase

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

The 1.0 A crystal structure of Ca(2+)-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity

Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation

Direct observation of protein solvation and discrete disorder with experimental crystallographic phases

Motions of calmodulin characterized using both Bragg and diffuse X-ray scattering

Coot: model-building tools for molecular graphics

VMD: visual molecular dynamics

Scalable molecular dynamics with NAMD

Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement

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9

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15

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5989340

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17850744

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protein structure

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structural biology

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2039884

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