The Trp-cage: optimizing the stability of a globular miniprotein - Wikidata - awgldk - TriplyDB

The Trp-cage: optimizing the stability of a globular miniprotein

The Trp-cage: optimizing the stability of a globular miniprotein

http://www.wikidata.org/entity/Q27649554

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A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction Computational Design of Thermostabilizing d -Amino Acid Substitutions Circular permutation of the Trp-cage: fold rescue upon addition of a hydrophobic staple Engineering protein stability with atomic precision in a monomeric miniprotein.Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.The effects of organic solvents on the folding pathway and associated thermodynamics of proteins: a microscopic view.FF12MC: A revised AMBER forcefield and new protein simulation protocol.Probing the lower size limit for protein-like fold stability: ten-residue microproteins with specific, rigid structures in water Fluorescence of tryptophan in designed hairpin and Trp-cage miniproteins: measurements of fluorescence yields and calculations by quantum mechanical molecular dynamics simulations.Spectroscopic studies of protein folding: linear and nonlinear methods Stabilizing capping motif for beta-hairpins and sheets.Fast protein folding kinetics Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation.Protonation/deprotonation effects on the stability of the Trp-cage miniprotein.How fast-folding proteins fold.Folding dynamics and pathways of the trp-cage miniproteins.Atomic-level structure characterization of an ultrafast folding mini-protein denatured state.Infinitely dilute partial molar properties of proteins from computer simulation.Four small puzzles that Rosetta doesn't solve.Role of tryptophan side chain dynamics on the Trp-cage mini-protein folding studied by molecular dynamics simulations.Lysine and arginine residues do not increase the helicity of alanine-rich peptide helices.Tuning the Attempt Frequency of Protein Folding Dynamics via Transition-State Rigidification: Application to Trp-Cage.Accelerated molecular dynamics simulations of protein folding.Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage.A Proline-Tryptophan Turn in the Intrinsically Disordered Domain 2 of NS5A Protein Is Essential for Hepatitis C Virus RNA Replication Photochemical formation of quinone methides from peptides containing modified tyrosine.Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein.Utility of 5-Cyanotryptophan Fluorescence as a Sensitive Probe of Protein Hydration Dynamic folding pathway models of the Trp-cage protein Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.Using D-Amino Acids to Delineate the Mechanism of Protein Folding: Application to Trp-cage.Assessment of local friction in protein folding dynamics using a helix cross-linker.Aromatic Cluster Sensor of Protein Folding: Near-UV Electronic Circular Dichroism Bands Assigned to Fold Compactness.The major determinant of exendin-4/glucagon-like peptide 1 differential affinity at the rat glucagon-like peptide 1 receptor N-terminal domain is a hydrogen bond from SER-32 of exendin-4.Correlation analysis for heat denaturation of Trp-cage miniprotein with explicit solvent.Thermodynamics of the Trp-cage miniprotein unfolding in urea Aryl-Aryl interactions in designed peptide folds: Spectroscopic characteristics and placement issues for optimal structure stabilization.Can template-based protein models guide the design of sequence fitness for enhanced thermal stability of single domain antibodies?Quantification of Drive-Response Relationships Between Residues During Protein Folding.

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The Trp-cage: optimizing the stability of a globular miniprotein

http://www.wikidata.org/entity/Q27649554

description

2008 nî lūn-bûn

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2008 թուականի Մարտին հրատարակուած գիտական յօդուած

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2008 թվականի մարտին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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name

The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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The Trp-cage: optimizing the stability of a globular miniprotein

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Protein Engineering Design and Selection

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The Trp-cage: optimizing the stability of a globular miniprotein

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Bipasha Barua

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Jasper C Lin

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Jonathan W Neidigh

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Niels H Andersen

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Phillip Kummler

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Victoria D Williams

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P2860

Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field

N- and C-capping preferences for all 20 amino acids in alpha-helical peptides

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

Exendin-4 and glucagon-like-peptide-1: NMR structural comparisons in the solution and micelle-associated states

Designing a 20-residue protein

Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding

MOLMOL: a program for display and analysis of macromolecular structures

Calculation of the free energy and cooperativity of protein folding

All-Atom Structure Prediction and Folding Simulations of a Stable Protein

Primary structure effects on peptide group hydrogen exchange

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4744066

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10.1093/PROTEIN/GZM082

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3

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21

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18203802

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3166533

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