Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation - Wikidata - awgldk - TriplyDB

Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation

Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation

http://www.wikidata.org/entity/Q27667887

about

Fluorescence-Based Strategies to Investigate the Structure and Dynamics of Aptamer-Ligand Complexes Molecular recognition and function of riboswitches The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold Structural determinants for ligand capture by a class II preQ 1 riboswitch Metabolite recognition principles and molecular mechanisms underlying riboswitch function Structure and function of preQ1 riboswitches Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure Mg2+Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection Tuning a riboswitch response through structural extension of a pseudoknot.Biosynthesis of pyrrolopyrimidines.Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch Structural, functional, and taxonomic diversity of three preQ1 riboswitch classes.Computational study of unfolding and regulation mechanism of preQ1 riboswitches.Insights into ligand binding to PreQ1 Riboswitch Aptamer from molecular dynamics simulations.Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamics.Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.Real-time crystallographic studies of the adenine riboswitch using an X-ray free-electron laser.Effect of ribonucleotides embedded in a DNA template on HIV-1 reverse transcription kinetics and fidelity Structure and mechanism of purine-binding riboswitches.Mg(2+)-induced conformational changes in the btuB riboswitch from E. coli Riboswitch structure in the ligand-free state.Themes and variations in riboswitch structure and function.Structure and function of pseudoknots involved in gene expression control.ITC analysis of ligand binding to preQ₁ riboswitches.Conformational Rearrangements of Individual Nucleotides during RNA-Ligand Binding Are Rate-Differentiated.Expanding the Scope of 2'-SCF3 Modified RNA.Mechanisms for differentiation between cognate and near-cognate ligands by purine riboswitches.Characterization of Engineered PreQ1 Riboswitches for Inducible Gene Regulation in Mycobacteria.Native purification and labeling of RNA for single molecule fluorescence studies Molecular mechanism of preQ1 riboswitch action: a molecular dynamics study.Measurement of Ligand-Target Residence Times by 1H Relaxation Dispersion NMR Spectroscopy.Biophysical properties, thermal stability and functional impact of 8-oxo-7,8-dihydroguanine on oligonucleotides of RNA-a study of duplex, hairpins and the aptamer for preQ1 as models.The "Speedy" Synthesis of Atom-Specific (15)N Imino/Amido-Labeled RNA.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.An excited state underlies gene regulation of a transcriptional riboswitch.Promiscuity in protein-RNA interactions: conformational ensembles facilitate molecular recognition in the spliceosome: conformational diversity in U2AF⁶⁵ facilitates binding to diverse RNA sequences.

P2860

Q26740493-37D848A1-F51A-4DFD-8CAE-FFF15CAFA54E Q27000757-1088E477-B8AA-4058-AB53-F065127DADE8 Q27317019-E6E76371-5184-4DFD-B460-ABA4BE8B502A Q27670760-C8919A7B-E40A-48D3-965C-2C76ED75505B Q27677362-BB10126F-BED8-4704-88A9-36686CC2A381 Q27681482-77A450D2-20C2-4439-BF4E-CE0C6C4DFBDD Q28109611-A855B254-0F16-4B9E-ADFE-6C543582057F Q28239535-C7A55D26-9CBF-4E3B-B981-A35793C77B78 Q28263943-C79855A7-887D-4F79-A394-BD7BC2CF766C Q28297873-7E589026-6ADD-42ED-8E87-9B34341D4790 Q29391512-39EAD76A-EC93-445B-AF38-910E675DFAEA Q30544038-FCFA792B-8675-44EB-871D-CFEAA08DDC7F Q33616474-4472C5AA-6ED1-43C7-8CCC-6348D514F48B Q34045584-CF6A8CB4-FA14-44B2-A682-501280E77AE9 Q34091541-77B77CA0-930B-4CC8-AF43-E44CFA95766B Q34428445-A2C0B519-6EEC-436B-8689-85C9ACA161AD Q35129214-B1855868-DABF-40E1-9AA8-AB6D615A3C6C Q36158558-FAB8943A-B3A9-48D6-9C25-E25E32585955 Q36191531-9D690CE1-6ADC-4821-84F3-3E49707D54A6 Q36371906-97465AE4-1024-4BDE-ABE0-EA834B21A3D4 Q36812323-DF19341E-1EB7-4AD4-BB6B-27DFF3683914 Q37141554-316B7C67-62CF-4A6B-89DF-CEBB71C4CE2E Q37400274-45A97F08-0EDB-4E07-AA74-8A6A5057C9CB Q37940436-B2DC283D-4250-4EC8-9532-518CD129E52D Q38192408-AC0F7EF1-1FEF-47F4-AD8D-44B56BD141CD Q38231976-7C49453D-64BF-4BC2-9293-958BAF97BB7F Q38272525-EFAD50F0-364C-45EF-A7DF-17B484A214F7 Q38293238-057D8637-46DF-47E9-8B67-D75A3A7B46E0 Q38298322-AC69DCAD-967B-46DE-8088-51FC043EE65B Q38324878-73DA007B-FF2E-4EB7-8B7A-1E0CE0816698 Q40378791-937A7578-D3A6-4089-9778-DD1B089044CE Q41974958-E4EE6A0F-D430-4F33-BABE-81EAF240A3AA Q42062129-6A4AB92E-4BF8-4394-9438-5A33F4359ECA Q42072638-3322481E-3320-46F8-9189-25C01199B789 Q42291807-8129C97D-9972-45B7-A62B-43EA4EA3C5E6 Q42418057-452D3577-31DB-4E0A-B4F4-3213CCA10592 Q47235409-4B3CF135-6F06-474E-9C8A-7431E5252CD2 Q48107704-3720384F-76F4-4FF0-864D-E142A251E501 Q53395592-72B1CF25-F161-4555-8D58-30A5EF80E575

P2860

Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation

http://www.wikidata.org/entity/Q27667887

description

2011 nî lūn-bûn

@nan

2011 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի հուլիսին հրատարակված գիտական հոդված

@hy

2011年の論文

@ja

2011年論文

@yue

2011年論文

@zh-hant

2011年論文

@zh-hk

2011年論文

@zh-mo

2011年論文

@zh-tw

2011年论文

@wuu

name

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@ast

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@en

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@nl

type

label

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@ast

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@en

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@nl

prefLabel

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@ast

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@en

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@nl

P1433

Q27667887-DAB95B3A-C552-484C-875C-526E266FCDF4

P1476

Q27667887-3726453C-2851-4EB8-ADB8-9EA57BF85427

P2093

Q27667887-0B094832-0177-4E7A-AF78-B96692C184A1

Q27667887-7B5F2103-E66F-4489-94F9-1B4D0E25B82A

Q27667887-7EFCA828-BAD9-49A9-8E28-6D99B735A28F

Q27667887-BAB73628-5BE7-4E4B-B36C-D6FD43414500

P2860

Q27667887-038B0663-DF14-4158-8624-5947874D43BF

Q27667887-0590B037-7D8C-4F1C-A7E0-84987809B287

Q27667887-090D8B3C-0747-48C4-A8FB-585F202B6F63

Q27667887-19E7BA35-C3A6-4E3E-8311-F45DC8F9AACD

Q27667887-2046A79E-2E6C-426A-BCEC-D954E4E0C4D8

Q27667887-235D373F-9BA6-4D80-80B8-D49EFF21A995

Q27667887-2617DCD8-55E9-4746-B75E-95E051990541

Q27667887-26939019-58B5-41D4-8D64-36597003D227

Q27667887-2E271136-ED28-4682-8121-25D84AE29376

Q27667887-389895DE-4047-4FB4-97CD-53003C20262B

P304

Q27667887-5363EA70-A75B-4C37-9971-EDF566D2808D

P31

Q27667887-648FF9EB-0C23-4BE9-9096-DE12BB678CD3

P3181

Q27667887-B9D9612E-6CB6-4602-B0FD-B4C8670C17C8

P356

Q27667887-68E61AAB-28C7-4DBB-97E2-2A426A3E79FE

P407

Q27667887-1C85E716-7B12-422F-A932-2E40FF0153E2

P433

Q27667887-DA6048F7-D1E4-44E3-9DD6-C0AEF8CDA53E

P478

Q27667887-D0224322-93CB-4821-AC8D-D07F7BF980D9

P50

Q27667887-E2FBBCE3-6315-480E-B2D4-164EF8E79C3A

P577

Q27667887-CD9A2404-6793-4678-B646-A37595BF48F7

P5875

Q27667887-03A5F2E0-4570-43D3-9C7F-0398F04DE0B4

P698

Q27667887-DE0C2780-1A62-4ABA-B529-159806B7880C

P921

Q27667887-F58A8310-35A5-44DC-ABF2-E33DCFD2A67C

P932

Q27667887-04F59770-41CC-455B-B5A6-259D20DE6F99

P3181

P356

JBC.M111.230375

P1433

Journal of Biological Chemistry

P1476

Comparison of a PreQ1 Riboswit ...... plications for Gene Regulation

@en

P2093

Jolanta Krucinska

http://www.w3.org/2001/XMLSchema#string

Joseph E Wedekind

http://www.w3.org/2001/XMLSchema#string

Reid M McCarty

http://www.w3.org/2001/XMLSchema#string

Vahe Bandarian

http://www.w3.org/2001/XMLSchema#string

P2860

The distributions, mechanisms, and structures of metabolite-binding riboswitches

Structural basis of ligand binding by a c-di-GMP riboswitch

Structural basis for recognition of S-adenosylhomocysteine by riboswitches

Crystal structure of the lysine riboswitch regulatory mRNA element

Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria

Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

Processing of X-ray diffraction data collected in oscillation mode

Structural insights into amino acid binding and gene control by a lysine riboswitch

The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain

Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

P304

24626-37

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

4319906

http://www.w3.org/2001/XMLSchema#string

P356

10.1074/JBC.M111.230375

http://www.w3.org/2001/XMLSchema#string

P407

P433

28

http://www.w3.org/2001/XMLSchema#string

P478

286

http://www.w3.org/2001/XMLSchema#string

P50

Jermaine L Jenkins

P577

2011-07-15T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

51146991

http://www.w3.org/2001/XMLSchema#string

P698

21592962

http://www.w3.org/2001/XMLSchema#string

P921

P932

3137038

http://www.w3.org/2001/XMLSchema#string