Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 - Wikidata - awgldk - TriplyDB

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

http://www.wikidata.org/entity/Q28246991

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A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis BiGG Models: A platform for integrating, standardizing and sharing genome-scale models Personalized Cardiovascular Disease Prediction and Treatment-A Review of Existing Strategies and Novel Systems Medicine Tools A constraint-based modelling approach to metabolic dysfunction in Parkinson's disease Analytics for Metabolic Engineering Software applications for flux balance analysis Integrative approaches for finding modular structure in biological networks Current state of genome-scale modeling in filamentous fungi Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network sybil – Efficient constraint-based modelling in R Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data Algal Cell Factories: Approaches, Applications, and Potentials Computational Methods for Modification of Metabolic Networks Synthetic biology outside the cell: linking computational tools to cell-free systems Using Genome-scale Models to Predict Biological Capabilities FAME, the Flux Analysis and Modeling Environment Reconstruction of Tissue-Specific Metabolic Networks Using CORDA Design constraints on a synthetic metabolism A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm Shrinking the metabolic solution space using experimental datasets Modeling phenotypic metabolic adaptations of Mycobacterium tuberculosis H37Rv under hypoxia MultiMetEval: comparative and multi-objective analysis of genome-scale metabolic models Fumaric acid production in Saccharomyces cerevisiae by in silico aided metabolic engineering A systems-level approach for investigating Pseudomonas aeruginosa biofilm formation Characterization of the metabolic requirements in yeast meiosis Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens Fast reconstruction of compact context-specific metabolic network models Biochemical characterization of human gluconokinase and the proposed metabolic impact of gluconic acid as determined by constraint based metabolic network analysis Identifying all moiety conservation laws in genome-scale metabolic networks Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain CONSTRICTOR: constraint modification provides insight into design of biochemical networks Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

http://www.wikidata.org/entity/Q28246991

description

2011 nî lūn-bûn

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2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի օգոստոսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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Quantitative prediction of cel ...... models: the COBRA Toolbox v2.0

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Nature Protocols

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Quantitative prediction of cel ...... odels: the COBRA Toolbox v2.0.

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Aarash Bordbar

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Adam M Feist

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Daniel C Zielinski

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Daniel R Hyduke

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Jan Schellenberger

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Jeffrey D Orth

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Joseph Kang

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Sorena Rahmanian

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targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis

Impact of the solvent capacity constraint on E. coli metabolism

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

KEGG: kyoto encyclopedia of genes and genomes

A protocol for generating a high-quality genome-scale metabolic reconstruction

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation.

Evolutionary programming as a platform for in silico metabolic engineering

The KEGG resource for deciphering the genome

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1290-1307

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scholarly article

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413348

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10.1038/NPROT.2011.308

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9

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6

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Nathan E. Lewis

Bernhard Palsson

Ronan Mt Fleming

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2011-08-04T00:00:00Z

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51610829

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1006436824

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21886097

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3319681

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