Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production - Wikidata - awgldk - TriplyDB

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

http://www.wikidata.org/entity/Q28475985

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A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis Constraint Based Modeling Going Multicellular Applications of Genome-Scale Metabolic Models in Biotechnology and Systems Medicine Software applications for flux balance analysis Integrative approaches for finding modular structure in biological networks sybil – Efficient constraint-based modelling in R Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement Computationally Modeling Lipid Metabolism and Aging: A Mini-review Differential producibility analysis (DPA) of transcriptomic data with metabolic networks: deconstructing the metabolic response of M. tuberculosis Shrinking the metabolic solution space using experimental datasets Modeling phenotypic metabolic adaptations of Mycobacterium tuberculosis H37Rv under hypoxia Inferring metabolic states in uncharacterized environments using gene-expression measurements Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain CONSTRICTOR: constraint modification provides insight into design of biochemical networks Flux Balance Analysis with Objective Function Defined by Proteomics Data-Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation Multiscale Metabolic Modeling of C4 Plants: Connecting Nonlinear Genome-Scale Models to Leaf-Scale Metabolism in Developing Maize Leaves Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis A refined genome-scale reconstruction of Chlamydomonas metabolism provides a platform for systems-level analyses Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress Integrated network analysis and effective tools in plant systems biology.Computational approaches for microalgal biofuel optimization: a review Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features Mechanistic systems modeling to guide drug discovery and development Integration of expression data in genome-scale metabolic network reconstructions.Metabolic network analysis of Pseudomonas aeruginosa during chronic cystic fibrosis lung infection Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by using proteomic data from a field biostimulation experiment.Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli.Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach.Methods for integration of transcriptomic data in genome-scale metabolic models.Prediction of metabolic flux distribution from gene expression data based on the flux minimization principle.Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment.Investigation on metabolism of cisplatin resistant ovarian cancer using a genome scale metabolic model and microarray data Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis

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P2860

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

http://www.wikidata.org/entity/Q28475985

description

2009 nî lūn-bûn

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2009 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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Interpreting expression data w ...... ulosis mycolic acid production

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JOURNAL.PCBI.1000489

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PLOS Computational Biology

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Interpreting expression data w ...... ulosis mycolic acid production

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Megan Murray

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Tan-Yun Cheng

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P2860

Flux balance analysis of mycolic acid pathway: targets for anti-tubercular drugs

Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

From genomics to chemical genomics: new developments in KEGG

Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence

Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets

Glutathione and growth inhibition of Mycobacterium tuberculosis in healthy and HIV infected subjects

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

A small-molecule nitroimidazopyran drug candidate for the treatment of tuberculosis

Pyrazinamide inhibits the eukaryotic-like fatty acid synthetase I (FASI) of Mycobacterium tuberculosis

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241419

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10.1371/JOURNAL.PCBI.1000489

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8

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Caroline Colijn

David Branch Moody

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2009-08-01T00:00:00Z

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26774079

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19714220

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Mycobacterium tuberculosis

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2726785

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