TreeFam v9: a new website, more species and orthology-on-the-fly - Wikidata - awgldk - TriplyDB

TreeFam v9: a new website, more species and orthology-on-the-fly

TreeFam v9: a new website, more species and orthology-on-the-fly

http://www.wikidata.org/entity/Q28660718

about

The Orthology Ontology: development and applications Emergence and Evolution of Hominidae-Specific Coding and Noncoding Genomic Sequences.A Drosophila-centric view of protein tyrosine phosphatases Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad Ensembl 2017 GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes Whole Genome Sequencing of the Asian Arowana (Scleropages formosus) Provides Insights into the Evolution of Ray-Finned Fishes Big data and other challenges in the quest for orthologs HieranoiDB: a database of orthologs inferred by Hieranoid WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction Standardized benchmarking in the quest for orthologs What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins.Maize and millet transcription factors annotated using comparative genomic and transcriptomic data.Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states.RNA binding motif protein 3: a potential biomarker in cancer and therapeutic target in neuroprotection.Genenames.org: the HGNC resources in 2015 Orthology and paralogy constraints: satisfiability and consistency.Protein homology reveals new targets for bioactive small molecules.Efficient Gene Tree Correction Guided by Genome Evolution On the consistency of orthology relationships Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.Ensembl comparative genomics resources.ncRNA orthologies in the vertebrate lineage Hyperlipidemia-associated gene variations and expression patterns revealed by whole-genome and transcriptome sequencing of rabbit models.Convergent Evolution of the Osmoregulation System in Decapod Shrimps.AmphiBase: A new genomic resource for non-model amphibian species.PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya A Guide to Computational Methods for Predicting Mitochondrial Localization.TreeDom: a graphical web tool for analysing domain architecture evolution.Genome Sequences of Marine Shrimp Exopalaemon carinicauda Holthuis Provide Insights into Genome Size Evolution of Caridea.Transcriptologs: A Transcriptome-Based Approach to Predict Orthology Relationships.SwissTargetPrediction: a web server for target prediction of bioactive small molecules.Polytomy refinement for the correction of dubious duplications in gene trees.Gearing up to handle the mosaic nature of life in the quest for orthologs.Evolution of intron-poor clades and expression patterns of the glycosyltransferase family 47.Conserved cytoplasmic domains promote Hrd1 ubiquitin ligase complex formation for ER-associated degradation (ERAD).Genome-wide protein phylogenies for four African cichlid species.ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream of transcription start sites at the majority of CpG island promoters.GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution.

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TreeFam v9: a new website, more species and orthology-on-the-fly

http://www.wikidata.org/entity/Q28660718

description

2014 nî lūn-bûn

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2014 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2014 թվականի հունվարին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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name

TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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TreeFam v9: a new website, more species and orthology-on-the-fly

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Nucleic Acids Research

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TreeFam v9: a new website, more species and orthology-on-the-fly

@en

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Fabian Schreiber

http://www.w3.org/2001/XMLSchema#string

Miguel Pignatelli

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P2860

BLAST+: architecture and applications

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

OMA 2011: orthology inference among 1000 complete genomes

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

The Pfam protein families database

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

TreeFam: 2008 Update

TreeFam: a curated database of phylogenetic trees of animal gene families

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scholarly article

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1034886

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10.1093/NAR/GKT1055

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Database issue

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42

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Matthieu Muffato

Mateus Patricio

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2014-01-01T00:00:00Z

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258314707

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24194607

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3965059

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