The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium - Wikidata - awgldk - TriplyDB

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

http://www.wikidata.org/entity/Q28710369

about

Exploring the potential of public proteomics data A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions.2016 update of the PRIDE database and its related tools Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry Making proteomics data accessible and reusable: current state of proteomics databases and repositories The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience Pride-asap: automatic fragment ion annotation of identified PRIDE spectra Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 Activities at the Universal Protein Resource (UniProt)The genomes of two key bumblebee species with primitive eusocial organization From Peptidome to PRIDE: public proteomics data migration at a large scale.Numerical compression schemes for proteomics mass spectrometry data How to submit MS proteomics data to ProteomeXchange via the PRIDE database.Consolidation of proteomics data in the Cancer Proteomics database.Mass spectrometry data from proteomics-based screening of immunoreactive proteins of fully virulent Brucella strains using sera from naturally infected animals An evolving computational platform for biological mass spectrometry: workflows, statistics and data mining with MASSyPup64 Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress.An integrative omics strategy to assess the germ cell secretome and to decipher sertoli-germ cell crosstalk in the Mammalian testis.A normative study of the synovial fluid proteome from healthy porcine knee joints.The bromodomain of Gcn5 regulates site specificity of lysine acetylation on histone H3 Proteomic analysis of the human cyclin-dependent kinase family reveals a novel CDK5 complex involved in cell growth and migration Controlled vocabularies and ontologies in proteomics: overview, principles and practice Functional analysis of Casein Kinase 1 in a minimal circadian system Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga.Proteomic Changes in Chicken Plasma Induced by Salmonella typhimurium Lipopolysaccharides.A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome.Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice.Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri.Integrin endosomal signalling suppresses anoikis.Review of software tools for design and analysis of large scale MRM proteomic datasets.Salinity-induced regulation of the myo-inositol biosynthesis pathway in tilapia gill epithelium.Quantitative molecular phenotyping of gill remodeling in a cichlid fish responding to salinity stress.Database-augmented Mass Spectrometry Analysis of Exosomes Identifies Claudin 3 as a Putative Prostate Cancer Biomarker.Immunoseroproteomic Profiling in African American Men with Prostate Cancer: Evidence for an Autoantibody Response to Glycolysis and Plasminogen-Associated Proteins.Major remodeling of brain microvessels during neonatal period in the mouse: A proteomic and transcriptomic study.Time-course investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics.2-DE proteomics analysis of drought treated seedlings of Quercus ilex supports a root active strategy for metabolic adaptation in response to water shortage.Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces

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The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

http://www.wikidata.org/entity/Q28710369

description

2012 nî lūn-bûn

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2012 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2012年論文

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2012年論文

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Molecular & Cellular Proteomics

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Albert J R Heck

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Attila Csordas

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Bas van Breukelen

http://www.w3.org/2001/XMLSchema#string

David Ovelleiro

http://www.w3.org/2001/XMLSchema#string

Harald Barsnes

http://www.w3.org/2001/XMLSchema#string

Henk W P van den Toorn

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Niels Hulstaert

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Richard G Côté

http://www.w3.org/2001/XMLSchema#string

Rui Wang

http://www.w3.org/2001/XMLSchema#string

Yasset Perez-Rivevol

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Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data

The mzIdentML data standard for mass spectrometry-based proteomics results

PRIDE: quality control in a proteomics data repository

PRIDE Inspector: a tool to visualize and validate MS proteomics data

mzML--a community standard for mass spectrometry data

A guide to the Proteomics Identifications Database proteomics data repository

OLS dialog: an open-source front end to the ontology lookup service

The Proteomics Identifications database: 2010 update

The Ontology Lookup Service: bigger and better

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12

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Henning Hermjakob

Juan Antonio Vizcaíno

Florian Reisinger

Lennart Martens

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2012-12-01T00:00:00Z

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22949509

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