Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
about
Inferring horizontal gene transferInsights into the phylogeny and coding potential of microbial dark matterReconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequenceProbabilistic models of eukaryotic evolution: time for integrationGenome-scale phylogenetic analysis finds extensive gene transfer among fungiIntracellular Ca-carbonate biomineralization is widespread in cyanobacteriaReconciliation and local gene tree rearrangement can be of mutual profitSupport measures to estimate the reliability of evolutionary events predicted by reconciliation methodsLateral gene transfer from the deadFPSAC: fast phylogenetic scaffolding of ancient contigs.Prokaryotic phylogenies inferred from whole-genome sequence and annotation dataBio++: efficient extensible libraries and tools for computational molecular evolution.Pareto-optimal phylogenetic tree reconciliationIntegrative modeling of gene and genome evolution roots the archaeal tree of lifeThe plastid ancestor originated among one of the major cyanobacterial lineages.Efficient exploration of the space of reconciled gene trees.An archaeal origin of eukaryotes supports only two primary domains of life.Supertrees Based on the Subtree Prune-and-Regraft Distance.The inference of gene trees with species trees.Synechococcus: 3 billion years of global dominance.Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria.Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.Superoxide dismutases and superoxide reductases.Lateral gene transfer, rearrangement, reconciliationJoint amalgamation of most parsimonious reconciled gene treesProbabilistic modeling of the evolution of gene synteny within reconciled phylogenies.RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees.Probabilistic inference of lateral gene transfer eventsEnrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.Unraveling the processes shaping mammalian gut microbiomes over evolutionary time.The growing tree of Archaea: new perspectives on their diversity, evolution and ecology.Horizontal Gene Transfer and the History of Life.Inferring gene duplications, transfers and losses can be done in a discrete framework.Inconsistency of Species Tree Methods under Gene Flow.Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.Recent events dominate interdomain lateral gene transfers between prokaryotes and eukaryotes and, with the exception of endosymbiotic gene transfers, few ancient transfer events persist.Species Tree Inference Using a Mixture Model.Assessing approaches for inferring species trees from multi-copy genes.PhyloSift: phylogenetic analysis of genomes and metagenomes
P2860
Q21045419-0F3FE12D-436F-4BD8-92E9-47CBCD01FA06Q24490632-27DF013A-9811-4D58-B97E-9DE1F11F30AAQ28606427-296B2D87-83EA-48F6-AD26-DA30F9DAC975Q28607617-E50A5A5E-B6AB-49BD-8B68-5690CC7D1FD9Q28607622-90E946B1-EED8-485F-8AB4-A4F0D138550DQ28654945-42EF52DE-10EB-4BE2-98B7-340C59493D09Q28660991-843A21C8-03FB-4C7E-83D2-7380677E07EBQ28676995-11D54EB9-E86B-422C-9421-10926BDA62CCQ28709140-EF6BBAF6-AA47-4A93-B1B5-DD0AA5BA8A94Q30353909-1202E34D-2755-4441-81DC-6596B26E79F2Q30670475-E5737E64-C37D-43CA-A32A-A3FC7D2CD528Q31117981-222A88FE-5B46-469D-8AEF-2F01B6B224CCQ33760337-723A98FD-A3D7-47DE-A41A-BD82A6EC6B1CQ33790927-6F797848-4CB3-4912-A701-41331F792D6AQ34042012-2927A7AF-8C22-4B60-A866-2621BA852D17Q34362570-99352DD3-906B-4E96-A250-8BD86782E246Q34391778-B7632F4C-4951-4D07-94F8-57F13F3758D0Q34413394-3102214F-820A-4C5E-8CD8-FB63A49AEF18Q34431226-FCA65521-9A25-40CF-BE37-37316E09B1F9Q34441807-E3C22024-7687-47A5-A0E8-580C31B43673Q34587516-92BE05AD-FFD6-4C9A-92CC-73F6EBB837E8Q34740862-5E099D41-CE42-46BB-97A5-33436383A1D6Q35049047-841F4798-199C-42C7-B697-D3EA12189B52Q35101200-631E80A9-8F65-40A0-BD33-BC066700B124Q35233979-61A2D9A0-1416-4BCF-8085-D76DE126584FQ35801663-473B3F73-19A3-4596-95D4-CFDEB242905BQ36033086-50C525E1-3E8D-40C3-8F11-FA9DA7F31005Q36206789-6E9EFD20-7027-4425-9924-144C560D0755Q36276525-B8F50F51-197F-4A33-ABAA-6DFC819D5ECFQ37224143-F7A468AF-5471-4450-98DF-59FC9CFFE189Q37672690-6D685827-06F2-4670-9383-4F46FC51C68CQ38640964-59533106-B951-456B-8B4F-6EBE55BB9981Q38708464-FB0848CB-2366-42CF-A554-D4FAC4ECBC5EQ38967634-FB3D8DDD-CEE9-4442-9AAD-9A28A4753CADQ39790156-1A81D04A-C4DC-4433-ADBC-2C69234E3389Q40351868-7AEF4A9B-8B80-499B-99DF-08E7E08EEC2FQ40589895-77839EFE-A6ED-4A5D-AC45-E3A44EF6CD0CQ40950249-C0C86BF7-5607-4A40-9998-370D158AE59DQ41650098-440EC384-1EA1-4279-9FCE-C5E159F5F052Q41882289-0CCBFF83-B6D7-4C4B-9507-963D32CD103B
P2860
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
description
2012 nî lūn-bûn
@nan
2012 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
Phylogenetic modeling of later ...... relative timing of speciations
@ast
Phylogenetic modeling of later ...... relative timing of speciations
@en
Phylogenetic modeling of later ...... relative timing of speciations
@nl
type
label
Phylogenetic modeling of later ...... relative timing of speciations
@ast
Phylogenetic modeling of later ...... relative timing of speciations
@en
Phylogenetic modeling of later ...... relative timing of speciations
@nl
prefLabel
Phylogenetic modeling of later ...... relative timing of speciations
@ast
Phylogenetic modeling of later ...... relative timing of speciations
@en
Phylogenetic modeling of later ...... relative timing of speciations
@nl
P2093
P2860
P3181
P356
P1476
Phylogenetic modeling of later ...... relative timing of speciations
@en
P2093
Bastien Boussau
Eric Tannier
Gergely J Szöllosi
Sophie S Abby
Vincent Daubin
P2860
P304
P3181
P356
10.1073/PNAS.1202997109
P407
P577
2012-10-23T00:00:00Z