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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

Dynamic evolution of base composition: causes and consequences in avian phylogenomics

http://www.wikidata.org/entity/Q28742103

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A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing Whole-genome analyses resolve early branches in the tree of life of modern birds Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes Ten genes and two topologies: an exploration of higher relationships in skipper butterflies (Hesperiidae)Direct estimate of the rate of germline mutation in a bird Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence Integration of Genetic and Phenotypic Data in 48 Lineages of Philippine Birds Shows Heterogeneous Divergence Processes and Numerous Cryptic Species Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes).A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution.Recombination drives vertebrate genome contraction.Evidence for widespread GC-biased gene conversion in eukaryotes.Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals.Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake.Kr/Kc but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection.Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes.Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3 Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates.Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes Can We Identify Genes with Increased Phylogenetic Reliability?Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System.Phylotranscriptomic Analysis Based on Coalescence was Less Influenced by the Evolving Rates and the Number of Genes: A Case Study in Ericales.Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea mays.Analytical Biases Associated with GC-Content in Molecular Evolution.GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species.New Statistical Criteria Detect Phylogenetic Bias Caused by Compositional Heterogeneity.Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes.Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas.Phylogenomics Controlling for Base Compositional Bias Reveals a Single Origin of Eusociality in Corbiculate Bees.The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium.Highly variable recombinational landscape modulates efficacy of natural selection in birds.Patterns and evolution of nucleotide landscapes in seed plants.Genomic evidence for large, long-lived ancestors to placental mammals.Using Illumina next generation sequencing technologies to sequence multigene families in de novo species.COI barcodes and phylogeny of doves (Columbidae family).Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes.Determinants of the Efficacy of Natural Selection on Coding and Noncoding Variability in Two Passerine Species.

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

http://www.wikidata.org/entity/Q28742103

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2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2011 թվականի օգոստոսին հրատարակված գիտական հոդված

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2011年论文

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Dynamic evolution of base composition: causes and consequences in avian phylogenomics

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Benoit Nabholz

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Rui Wang

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Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin

The genome of a songbird

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Additional molecular support for the new chordate phylogeny

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

Phylogeny and diversification of the largest avian radiation

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds

Diversification of Neoaves: integration of molecular sequence data and fossils

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