Pathway databases and tools for their exploitation: benefits, current limitations and challenges
about
sameAs
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseasesNetwork medicine analysis of COPD multimorbiditiesPathway Analysis: State of the ArtCurrent perspectives on the use of alternative species in human health and ecological hazard assessmentsIdentification of aberrant pathways and network activities from high-throughput dataAutomatically visualise and analyse data on pathways using PathVisioRPC from any programming environmentPrecise generation of systems biology models from KEGG pathwaysReactome from a WikiPathways PerspectiveTraining signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuliSignalogs: orthology-based identification of novel signaling pathway components in three metazoansAutomatic filtering and substantiation of drug safety signalsToward an integrated software platform for systems pharmacologyIntegrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's diseaseApplications of translational bioinformatics in transplantationQualitative translation of relations from BioPAX to SBML qualCreating and analyzing pathway and protein interaction compendia for modelling signal transduction networksComparisons of seven algorithms for pathway analysis using the WTCCC Crohn's Disease datasetTen years of pathway analysis: current approaches and outstanding challengesA comprehensive molecular interaction map of the budding yeast cell cycle.Signalling pathway database usability: lessons learned.CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms.Oncofinder, a new method for the analysis of intracellular signaling pathway activation using transcriptomic data.R-based software for the integration of pathway data into bioinformatic algorithms.Critical assessment of human metabolic pathway databases: a stepping stone for future integration.NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes.Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction.graphite - a Bioconductor package to convert pathway topology to gene network.OREMPdb: a semantic dictionary of computational pathway models.AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease.Learning dysregulated pathways in cancers from differential variability analysis.Extracting reaction networks from databases-opening Pandora's box.BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formatsMicroarray analyses reveal novel targets of exercise-induced stress resistance in the dorsal raphe nucleus.Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges.Extending biochemical databases by metabolomic surveys.A systems biological approach reveals multiple crosstalk mechanism between gram-positive and negative bacterial infections: an insight into core mechanism and unique molecular signatures.The OncoFinder algorithm for minimizing the errors introduced by the high-throughput methods of transcriptome analysisIPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.Accelerating cancer systems biology research through Semantic Web technology.
P2860
Q21135363-8F0FBD0F-5900-48CC-9588-6C1BC29898E9Q21146673-D0F9939C-3CC2-42AE-96A9-77EFDE73360EQ26770725-6FC9843F-E51C-4129-8B00-3DC9B65DB5D0Q26825743-D881652A-F38E-401F-8031-8428B83FF255Q26829854-95B97AAF-721F-42BF-88D9-75A6D6C2C6A4Q27134934-9F4B966D-3B42-42BB-872D-528DE6F97941Q27499052-560BDD74-2FA3-4108-AF5C-B15D837EF0F1Q27832078-44DB0224-1F93-439D-8780-4FBADC6EBC25Q28477321-AEDB0D44-98E0-4448-B2A3-D2AF95DEA48EQ28478034-79243265-14F1-4D47-B875-50885DEA5C92Q28482131-3A7CC144-80CF-4513-998A-E24FE309E10BQ28650510-B8BF98D0-1680-4A98-A84F-03EBE1F6505AQ28677042-0AB88940-6BE2-4DE0-8FE0-8D282D610318Q28716539-8B004439-B33F-4F97-B219-23E86A4B9D2CQ28727231-F21849B0-AA83-4E05-859E-3717B61AAD1DQ28727977-A15EDED6-CCC3-43DE-99ED-5057948B22FAQ28743536-75F7C3CE-790E-4065-8A18-D67E17B281D3Q29615564-E94E6073-11C8-4010-8295-781ECC9116CBQ30484678-C1D55F50-20EF-41DA-8FA0-C1C473A3949DQ30486334-C97B66B4-764A-4051-AF06-33F4933D548AQ30573980-1DFAD568-4AE7-448C-B9DB-505E6EA157DFQ30798762-47E01AE2-6D15-4567-97DF-FB755186EDC4Q30821850-270ED9D0-09C0-4AA0-9C16-8BF1CC063590Q31039028-3026EE55-5F31-4C96-B1AF-9219155F19D6Q31140890-5FE4A5BB-AC95-4DBC-A4C1-8D5F2D9B99CCQ33575787-D23506CD-842C-4CFD-AE68-60B6BAF04EF3Q33668279-FA22F5A2-E44D-4D30-9427-926031259176Q34146842-42AFC389-4121-4AB1-90EB-825123FFD9C0Q34248075-3C09A06E-41EA-4392-B29F-7F65C5543C19Q34286579-A7082CDE-62DA-45DA-8BA0-5F062DCF3E8AQ34445068-04A7561D-9A17-4D7D-89C7-04200047FBE5Q34553623-3A085D70-D210-4B3E-927A-C730F37C2DFCQ34604749-3E6CDAA6-7E54-4EC7-97DD-8D560DB01D4DQ34743798-18DADDB5-5C48-47B8-91B7-C3F9DB523EA2Q35021687-94FAAD62-E524-48CA-882D-1896C3CEF5F2Q35084955-A60EB470-5C4B-46DA-A3C0-AE5B364E5887Q35108521-D5EAB354-389C-4249-BF9B-44B0F2E1301AQ35596515-5532409E-DDA8-4A1C-8309-418404366207Q36227910-44BCAC08-C41F-4E4F-A155-1A34D579C8C6Q36572429-8630584E-ECAB-41F4-85F9-8D547CE54C61
P2860
Pathway databases and tools for their exploitation: benefits, current limitations and challenges
description
2009 թուականին հրատարակուած գիտական յօդուած
@hyw
2009 թվականին հրատարակված գիտական հոդված
@hy
artículu científicu espublizáu en 2009
@ast
scientific article (publication date: 2009)
@en
vedecký článok (publikovaný 2009)
@sk
vědecký článek publikovaný v roce 2009
@cs
wetenschappelijk artikel (gepubliceerd in 2009)
@nl
wissenschaftlicher Artikel
@de
наукова стаття, опублікована у 2009
@uk
مقالة علمية (نشرت عام 2009)
@ar
name
Pathway databases and tools fo ...... ent limitations and challenges
@ast
Pathway databases and tools fo ...... ent limitations and challenges
@en
Pathway databases and tools fo ...... ent limitations and challenges
@nl
type
label
Pathway databases and tools fo ...... ent limitations and challenges
@ast
Pathway databases and tools fo ...... ent limitations and challenges
@en
Pathway databases and tools fo ...... ent limitations and challenges
@nl
prefLabel
Pathway databases and tools fo ...... ent limitations and challenges
@ast
Pathway databases and tools fo ...... ent limitations and challenges
@en
Pathway databases and tools fo ...... ent limitations and challenges
@nl
P2860
P3181
P356
P1476
Pathway databases and tools fo ...... ent limitations and challenges
@en
P2093
Anna Bauer-Mehren
P2860
P3181
P356
10.1038/MSB.2009.47
P407
P577
2009-01-01T00:00:00Z