The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data
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CHARMM: the biomolecular simulation programThe conducting form of gramicidin A is a right-handed double-stranded double helixNoncontact dipole effects on channel permeation. V. Computed potentials for fluorinated gramicidinStructural consequences of anesthetic and nonimmobilizer interaction with gramicidin A channels.Continuum electrostatics fails to describe ion permeation in the gramicidin channel.Noncontact dipole effects on channel permeation. II. Trp conformations and dipole potentials in gramicidin A.Tilt and azimuthal angles of a transmembrane peptide: a comparison between molecular dynamics calculations and solid-state NMR data of sarcolipin in lipid membranes.Modeling of ion channelsStructural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.Gramicidin D conformation, dynamics and membrane ion transport.Free energy profiles for H+ conduction along hydrogen-bonded chains of water molecules.Heterodimer formation and crystal nucleation of gramicidin D.Noncontact dipole effects on channel permeation. I. Experiments with (5F-indole)Trp13 gramicidin A channels.Noncontact dipole effects on channel permeation. III. Anomalous proton conductance effects in gramicidin.The role of Trp side chains in tuning single proton conduction through gramicidin channels.Gramicidin A channel as a test ground for molecular dynamics force fieldsThe role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currentsIonic permeation free energy in gramicidin: a semimicroscopic perspective.Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields.Energetics of ion conduction through the gramicidin channelPredicting the DNA sequence dependence of nanopore ion current using atomic-resolution Brownian dynamics.Tryptophan contributions to the empirical free-energy profile in gramicidin A/M heterodimer channels.The gramicidin channel ion permeation free-energy profile: direct and indirect effects of CHARMM force field improvementsA lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.Statistical mechanical equilibrium theory of selective ion channels.A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels.Influence of the membrane potential on the free energy of an intrinsic protein.Gramicidin A backbone and side chain dynamics evaluated by molecular dynamics simulations and nuclear magnetic resonance experiments. I: molecular dynamics simulations.Sequence specific stabilization of a linear analog of the antifungal lipopeptide iturin A2 by sodium during low energy electrospray ionization mass spectrometry conditions.On a novel rate theory for transport in narrow ion channels and its application to the study of flux optimization via geometric effects.
P2860
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P2860
The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data
description
1997 nî lūn-bûn
@nan
1997 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
1997 թվականի մայիսին հրատարակված գիտական հոդված
@hy
1997年の論文
@ja
1997年論文
@yue
1997年論文
@zh-hant
1997年論文
@zh-hk
1997年論文
@zh-mo
1997年論文
@zh-tw
1997年论文
@wuu
name
The binding site of sodium in ...... mics with solid-state NMR data
@ast
The binding site of sodium in ...... mics with solid-state NMR data
@en
type
label
The binding site of sodium in ...... mics with solid-state NMR data
@ast
The binding site of sodium in ...... mics with solid-state NMR data
@en
prefLabel
The binding site of sodium in ...... mics with solid-state NMR data
@ast
The binding site of sodium in ...... mics with solid-state NMR data
@en
P2860
P1433
P1476
The binding site of sodium in ...... mics with solid-state NMR data
@en
P2860
P304
P356
10.1016/S0006-3495(97)78839-8
P407
P577
1997-05-01T00:00:00Z