HHomp--prediction and classification of outer membrane proteins. - Wikidata - awgldk - TriplyDB

HHomp--prediction and classification of outer membrane proteins.

HHomp--prediction and classification of outer membrane proteins.

http://www.wikidata.org/entity/Q30157261

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CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria The 3D structures of VDAC represent a native conformation Type V secretion: mechanism(s) of autotransport through the bacterial outer membrane ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea Protein domain of unknown function 3233 is a translocation domain of autotransporter secretory mechanism in gamma proteobacteria Discovery of Novel Leptospirosis Vaccine Candidates Using Reverse and Structural Vaccinology.Predicting Beta Barrel Transmembrane Proteins Using HMMs.PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins.Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes.Contact- and Protein Transfer-Dependent Stimulation of Assembly of the Gliding Motility Machinery in Myxococcus xanthus.A novel Mitosomal β-barrel Outer Membrane Protein in Entamoeba The inverse autotransporter intimin exports its passenger domain via a hairpin intermediate.Structural modeling and physicochemical characterization provide evidence that P66 forms a β-barrel in the Borrelia burgdorferi outer membrane.BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes.Intimin and invasin export their C-terminus to the bacterial cell surface using an inverse mechanism compared to classical autotransport.Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?TMBB-DB: a transmembrane β-barrel proteome database.Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions.Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation Characterization of Esterase A, a Pseudomonas stutzeri A15 Autotransporter.BOCTOPUS: improved topology prediction of transmembrane β barrel proteins.Assembly of the β-Barrel Outer Membrane Proteins in Gram-Negative Bacteria, Mitochondria, and Chloroplasts.Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria.Eukaryote-wide sequence analysis of mitochondrial β-barrel outer membrane proteins Surface immunolabeling and consensus computational framework to identify candidate rare outer membrane proteins of Treponema pallidum.Porins in prokaryotes and eukaryotes: common themes and variations.Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin.Divergence between the Highly Virulent Zoonotic Pathogen Helicobacter heilmannii and Its Closest Relative, the Low-Virulence "Helicobacter ailurogastricus" sp. nov.Outer membrane proteins can be simply identified using secondary structure element alignment.PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis.Identification and characterization of a novel porin family highlights a major difference in the outer membrane of chlamydial symbionts and pathogens.Cyclic di-GMP modulates gene expression in Lyme disease spirochetes at the tick-mammal interface to promote spirochete survival during the blood meal and tick-to-mammal transmission Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins Conserved features and major differences in the outer membrane protein composition of chlamydiae.Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins.Transport protein evolution deduced from analysis of sequence, topology and structure.Prediction of structural features and application to outer membrane protein identification Genomic analysis indicates the presence of an asymmetric bilayer outer membrane in planctomycetes and verrucomicrobia.

P2860

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P2860

HHomp--prediction and classification of outer membrane proteins.

http://www.wikidata.org/entity/Q30157261

description

2009 nî lūn-bûn

@nan

2009 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի մայիսին հրատարակված գիտական հոդված

@hy

2009年の論文

@ja

2009年論文

@yue

2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

@zh-tw

2009年论文

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name

HHomp--prediction and classification of outer membrane proteins.

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HHomp--prediction and classification of outer membrane proteins.

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type

label

HHomp--prediction and classification of outer membrane proteins.

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HHomp--prediction and classification of outer membrane proteins.

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prefLabel

HHomp--prediction and classification of outer membrane proteins.

@ast

HHomp--prediction and classification of outer membrane proteins.

@en

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P1433

Nucleic Acids Research

P1476

HHomp--prediction and classification of outer membrane proteins.

@en

P2093

Dirk Linke

http://www.w3.org/2001/XMLSchema#string

Michael Remmert

http://www.w3.org/2001/XMLSchema#string

P2860

The Protein Data Bank

Membrane protein prediction methods

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.

Kalign--an accurate and fast multiple sequence alignment algorithm

Basic local alignment search tool

Fiber formation across the bacterial outer membrane by the chaperone/usher pathway

Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles

Structure of the human voltage-dependent anion channel

Protein secondary structure prediction based on position-specific scoring matrices

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W446-51

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scholarly article

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10.1093/NAR/GKP325

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Web Server issue

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37

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Johannes Söding

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2009-05-08T00:00:00Z

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24415355

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19429691

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2703889

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