Molecular dynamics in the endgame of protein structure prediction.
about
Progress and challenges in protein structure predictionAtomic-level protein structure refinement using fragment-guided molecular dynamics conformation samplingHomology modeling using parametric alignment ensemble generation with consensus and energy-based model selectionRefinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization.Develop and test a solvent accessible surface area-based model in conformational entropy calculationsi3Drefine software for protein 3D structure refinement and its assessment in CASP10Princeton_TIGRESS: protein geometry refinement using simulations and support vector machines.Protein structure refinement of CASP target proteins using GNEIMO torsional dynamics methodEnsemble MD simulations restrained via crystallographic data: accurate structure leads to accurate dynamicsProtein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.The LA loop as an important regulatory element of the HtrA (DegP) protease from Escherichia coli: structural and functional studies.Ab initio protein structure prediction using chunk-TASSERTowards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field.Protein NMR structures refined without NOE dataThe electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.Internal coordinate molecular dynamics: a foundation for multiscale dynamicsProtein model refinement using an optimized physics-based all-atom force fieldSolvent dramatically affects protein structure refinement.Protein structure prediction: when is it useful?Assessment of the utility of contact-based restraints in accelerating the prediction of protein structure using molecular dynamics simulations.Assessment of the protein-structure refinement category in CASP8Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics.New statistical potential for quality assessment of protein models and a survey of energy functionsFF12MC: A revised AMBER forcefield and new protein simulation protocol.Reliable protein structure refinement using a physical energy function.Trends in template/fragment-free protein structure predictionAssessment of protein structure refinement in CASP9.Structure refinement of protein low resolution models using the GNEIMO constrained dynamics method.Refinement of protein structure homology models via long, all-atom molecular dynamics simulations.eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.Homology modeling a fast tool for drug discovery: current perspectives.Protein Structure Refinement through Structure Selection and Averaging from Molecular Dynamics Ensembles.Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models.Physics-based protein structure refinement through multiple molecular dynamics trajectories and structure averaging.Refinement of homology-based protein structures by molecular dynamics simulation techniques.Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?Alternating evolutionary pressure in a genetic algorithm facilitates protein model selection.A novel side-chain orientation dependent potential derived from random-walk reference state for protein fold selection and structure prediction.In silico study and validation of phosphotransacetylase (PTA) as a putative drug target for Staphylococcus aureus by homology-based modelling and virtual screening.Smoothing protein energy landscapes by integrating folding models with structure prediction
P2860
Q22251179-EFED823A-1BA4-4149-BE11-B3410D5768BAQ24627931-A82F41AD-BA5D-462D-AD62-82012EBF10CBQ24674821-F46688EC-3B9C-4D1E-9045-B7BF5FF3B40CQ24811274-F1694224-88FE-4844-82BD-EAE66FA1569AQ28384833-234E5C12-50DE-408D-9DB7-E667DAE4A131Q30352428-4600D549-05BF-4395-A06A-C3B0D5E91796Q30355061-5F224738-198D-4080-A61F-5B6701723D86Q30357605-B013897B-1C62-4ADD-BF8A-DF789581307AQ30358188-8355B0F5-A28F-4F96-BF9B-C19B7254A4A5Q30359279-C73CD7F6-BF6D-4D41-9081-DD006C924144Q30361409-21734EB6-3276-4045-9CD0-E1D623D96171Q30361590-E8F921A2-B85E-46FB-BA47-C0CA7BEECFA3Q30362704-AB404AC4-1B77-4744-8F29-B786D65BADB0Q30367415-A6A68E07-D908-4294-9C16-C9E9D8060264Q30369767-D2126D21-049A-40A6-B672-0C8D58CE1334Q30369903-BB465617-514C-4785-933C-6B7167813BE7Q30369943-4E8DEA2B-4753-4C21-9F4E-90ABC18E144DQ30373863-4D459798-B01B-4E1E-94A6-BA0A44D7A730Q30375840-DA786503-4833-49BD-B812-068A61AFD4BDQ30377837-8D5C8179-85AA-4647-948B-F2492644AD6BQ30380207-0CEF7B14-D55A-4FA3-BD0E-F736E087D4A7Q30380377-E4F47FAD-3D74-4D62-AD2F-5AB7C3AEC8C5Q30386627-CF48588D-BCA8-4BA5-A8C8-F0D0CACA8C0EQ30389832-27882DB0-5FD9-4AD6-BF23-52ED9897A588Q30394590-E1370FAC-AE38-414C-839C-FEEFD3822B5DQ30400985-CD8F5E78-1EDF-4079-9095-252FE69DD560Q30409206-F22A0465-B74D-4846-9B70-5A706D1CB88AQ30411996-BCAB5915-7F3F-4B6C-8DD2-D128BFA15145Q30415550-774DFCF1-B8B3-49AF-96E5-1B43D12365EFQ30424100-BF3F73D3-0758-42E0-96F3-5C5F2CB158FBQ30424335-19465818-866E-440F-95CE-9F289AE965FBQ30428682-986DFFCE-F944-46F8-B09F-5BE9F94FE19EQ30430992-87C4C2CA-0116-4421-BA0D-89A946C16458Q30431472-1BFDD402-5D1A-41DD-8377-86CCD63D092EQ30886624-31C48B84-E8F6-4E12-9AE9-D3B5FEC11145Q33313512-0E6F2501-EA55-4ABB-A5A3-F463E0C6CE87Q33357040-FCE6CBF5-5C8D-428A-83DA-3729573E41AFQ33742190-52E1377B-10B5-4054-ABE1-565C530ABDFAQ34440373-64C35632-3358-49CE-B74D-D577763F5335Q35512701-FF81AEF7-9A4E-44E5-8D6D-1F691CFA768B
P2860
Molecular dynamics in the endgame of protein structure prediction.
description
2001 nî lūn-bûn
@nan
2001 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2001 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2001年の論文
@ja
2001年論文
@yue
2001年論文
@zh-hant
2001年論文
@zh-hk
2001年論文
@zh-mo
2001年論文
@zh-tw
2001年论文
@wuu
name
Molecular dynamics in the endgame of protein structure prediction.
@ast
Molecular dynamics in the endgame of protein structure prediction.
@en
type
label
Molecular dynamics in the endgame of protein structure prediction.
@ast
Molecular dynamics in the endgame of protein structure prediction.
@en
prefLabel
Molecular dynamics in the endgame of protein structure prediction.
@ast
Molecular dynamics in the endgame of protein structure prediction.
@en
P2093
P356
P1476
Molecular dynamics in the endgame of protein structure prediction.
@en
P2093
P304
P356
10.1006/JMBI.2001.5032
P407
P577
2001-10-01T00:00:00Z