Deriving protein dynamical properties from weighted protein contact number.
about
Protein thermal stability enhancement by designing salt bridges: a combined computational and experimental studyCauses of evolutionary rate variation among protein sitesFunctional Sites Induce Long-Range Evolutionary Constraints in EnzymesSite-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure.Identifying essential pairwise interactions in elastic network model using the alpha shape theory.EXIA2: web server of accurate and rapid protein catalytic residue prediction.The conservation profile of a protein bears the imprint of the molecule that is evolutionarily coupled to the protein.(PS)2: protein structure prediction server version 3.0.Sequence Conservation, Radial Distance and Packing Density in Spherical Viral Capsids.Dissecting the roles of local packing density and longer-range effects in protein sequence evolutionFluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction.Predicting Real-Valued Protein Residue Fluctuation Using FlexPred.Improving prediction of helix-helix packing in membrane proteins using predicted contact numbers as restraints.Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein.On the Relationship between Residue Structural Environment and Sequence Conservation in Proteins.Structural features that predict real-value fluctuations of globular proteinsEvolutionary information hidden in a single protein structure.Accurate prediction of protein catalytic residues by side chain orientation and residue contact density.On the relationship between the sequence conservation and the packing density profiles of the protein complexes.Structural dynamics flexibility informs function and evolution at a proteome scale.Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility.Local packing density is the main structural determinant of the rate of protein sequence evolution at site level.Deciphering the preference and predicting the viability of circular permutations in proteins.On the packing density of the unbound protein-protein interaction interface and its implications in dynamics.Too packed to change: side-chain packing and site-specific substitution rates in protein evolutionCPred: a web server for predicting viable circular permutations in proteinsUsing catalytic atom maps to predict the catalytic functions present in enzyme active sites.On the structural context and identification of enzyme catalytic residues.All-atom contact model for understanding protein dynamics from crystallographic B-factorsProtein elastic network models and the ranges of cooperativitySequence-based Gaussian network model for protein dynamics.Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites.Intermediate divergence levels maximize the strength of structure-sequence correlations in enzymes and viral proteins.Gaussian network model can be enhanced by combining solvent accessibility in proteins.Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM).Inferring a weighted elastic network from partial unfolding with coarse-grained simulations.B-factor profile prediction for RNA flexibility using support vector machines.Predicting the Flexibility Profile of Ribosomal RNAs.
P2860
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P2860
Deriving protein dynamical properties from weighted protein contact number.
description
2008 nî lūn-bûn
@nan
2008 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Deriving protein dynamical properties from weighted protein contact number.
@ast
Deriving protein dynamical properties from weighted protein contact number.
@en
type
label
Deriving protein dynamical properties from weighted protein contact number.
@ast
Deriving protein dynamical properties from weighted protein contact number.
@en
prefLabel
Deriving protein dynamical properties from weighted protein contact number.
@ast
Deriving protein dynamical properties from weighted protein contact number.
@en
P2093
P356
P1433
P1476
Deriving protein dynamical properties from weighted protein contact number.
@en
P2093
Chien-Hua Shih
Chih-Hao Lu
Chih-Peng Lin
Cuen-Chao Huang
Jenn-Kang Hwang
Shao-Wei Huang
Shih-Chung Yen
Yan-Long Lai
P304
P356
10.1002/PROT.21983
P407
P577
2008-08-01T00:00:00Z