How well can the accuracy of comparative protein structure models be predicted? - Wikidata - awgldk - TriplyDB

How well can the accuracy of comparative protein structure models be predicted?

How well can the accuracy of comparative protein structure models be predicted?

http://www.wikidata.org/entity/Q30372425

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Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness ModBase, a database of annotated comparative protein structure models, and associated resources The Protein Model Portal--a comprehensive resource for protein structure and model information Comprehensive Molecular Structure of the Eukaryotic Ribosome The Ionic and hydrophobic interactions are required for the auto activation of cysteine proteases of Plasmodium falciparum Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening Mutations in the Na(+)/citrate cotransporter NaCT (SLC13A5) in pediatric patients with epilepsy and developmental delay Comparative protein structure modeling using Modeller A global machine learning based scoring function for protein structure prediction.ModBase, a database of annotated comparative protein structure models and associated resources.Comparative Protein Structure Modeling Using MODELLER QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information.Physical binding pocket induction for affinity prediction.Sub-AQUA: real-value quality assessment of protein structure models.Toward the estimation of the absolute quality of individual protein structure models Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states.A sampling-based method for ranking protein structural models by integrating multiple scores and features.Protein structure validation by generalized linear model root-mean-square deviation prediction.Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal.UCSF Chimera, MODELLER, and IMP: an integrated modeling system.A new family of bacterial DNA repair proteins annotated by the integration of non-homology, distant homology and structural bioinformatic methods.Regulatory elements within the prodomain of Falcipain-2, a cysteine protease of the malaria parasite Plasmodium falciparum Molecular docking screens using comparative models of proteins GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains.Molecular modeling and ligand docking for solute carrier (SLC) transporters Determinants of substrate and cation transport in the human Na+/dicarboxylate cotransporter NaDC3.Prediction of protease substrates using sequence and structure features.VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.Functional architecture of MFS D-glucose transporters.Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster.DFGmodel: predicting protein kinase structures in inactive states for structure-based discovery of type-II inhibitors Inhibitor Discovery for the Human GLUT1 from Homology Modeling and Virtual Screening Heat Shock Protein 90 Associates with the Per-Arnt-Sim Domain of Heme-free Soluble Guanylate Cyclase: IMplications for Enzyme Maturation.Resurrecting ancestral structural dynamics of an antiviral immune receptor: adaptive binding pocket reorganization repeatedly shifts RNA preference.Structure-Based Identification of Inhibitors for the SLC13 Family of Na(+)/Dicarboxylate Cotransporters.Structure-based ligand discovery for the Large-neutral Amino Acid Transporter 1, LAT-1 A computational analysis of the structural determinants of APOBEC3's catalytic activity and vulnerability to HIV-1 Vif.Ancient origins of vertebrate-specific innate antiviral immunity.Antibodies to a single, conserved epitope in Anopheles APN1 inhibit universal transmission of Plasmodium falciparum and Plasmodium vivax malaria.An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences.

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P2860

How well can the accuracy of comparative protein structure models be predicted?

http://www.wikidata.org/entity/Q30372425

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2008 nî lūn-bûn

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How well can the accuracy of comparative protein structure models be predicted?

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How well can the accuracy of comparative protein structure models be predicted?

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Narayanan Eswar

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P2860

The Protein Data Bank

The relation between the divergence of sequence and structure in proteins

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

UniProt: the Universal Protein knowledgebase

A composite score for predicting errors in protein structure models

Practical lessons from protein structure prediction.

MODBASE: a database of annotated comparative protein structure models and associated resources.

Protein secondary structure prediction based on position-specific scoring matrices

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

Comparative protein structure modeling of genes and genomes

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