Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites.
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Native proteins trap high-energy transit conformationsCrystal Structure of an Ammonia-Permeable AquaporinFunctional modulation of a protein folding landscape via side-chain distortionDetection of trans-cis flips and peptide-plane flips in protein structuresProtein Thermostability Is Owing to Their Preferences to Non-Polar Smaller Volume Amino Acids, Variations in Residual Physico-Chemical Properties and More Salt-BridgesImprovements to robotics-inspired conformational sampling in rosettaInterplay between peptide bond geometrical parameters in nonglobular structural contexts.Conformation-dependent backbone geometry restraints set a new standard for protein crystallographic refinement.High accuracy of Karplus equations for relating three-bond J couplings to protein backbone torsion angles.On interpretation of protein X-ray structures: Planarity of the peptide unit.The determinants of bond angle variability in protein/peptide backbones: A comprehensive statistical/quantum mechanics analysis.De novo protein conformational sampling using a probabilistic graphical model.An Anisotropic Coarse-Grained Model for Proteins Based On Gay-Berne and Electric Multipole Potentials.Restricting the ψ Torsion Angle Has Stereoelectronic Consequences on a Scissile Bond: An Electronic Structure Analysis.Energetically unfavorable amide conformations for N6-acetyllysine side chains in refined protein structures.Half a century of Ramachandran plots.The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.Far-infrared amide IV-VI spectroscopy of isolated 2- and 4-Methylacetanilide.Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å.On the reliability of peptide nonplanarity seen in ultra-high resolution crystal structures.How planar are planar peptide bonds?MolProbity: More and better reference data for improved all-atom structure validation.Dissection of Factors Affecting the Variability of the Peptide Bond Geometry and Planarity.Structures and Mechanisms of the Non-Heme Fe(II)- and 2-Oxoglutarate-Dependent Ethylene-Forming Enzyme: Substrate Binding Creates a Twist.Model validation: local diagnosis, correction and when to quit.
P2860
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P2860
Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites.
description
2011 nî lūn-bûn
@nan
2011 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@ast
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@en
type
label
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@ast
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@en
prefLabel
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@ast
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@en
P2093
P2860
P356
P1476
Nonplanar peptide bonds in pro ...... ot biased toward active sites.
@en
P2093
Camden M Driggers
Donald S Berkholz
Maxim V Shapovalov
P Andrew Karplus
P2860
P304
P356
10.1073/PNAS.1107115108
P407
P577
2011-12-23T00:00:00Z